View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9062_low_3 (Length: 452)
Name: NF9062_low_3
Description: NF9062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9062_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 130 - 436
Target Start/End: Complemental strand, 40653054 - 40652746
Alignment:
| Q |
130 |
tatccaatgattcaaaataatagaatctttcaatgtttatctttatcctgacagaaatagaatgcaaagcaacactatataaggtagaggtgaatcccac |
229 |
Q |
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| T |
40653054 |
tatccaatgattcaaaataatagaatctttcaatgtttatctttatcctgacagaaatagaatgcaaagcaacactatataaggtagaggtgaatcccaa |
40652955 |
T |
|
| Q |
230 |
ctatattgacagaccaaaatttaacaataaaaacaacatatgtattaaaaagatcaatgtagaacatttcaatgtagctatcacgaaattgtcaacaaaa |
329 |
Q |
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| T |
40652954 |
ctatattgacagaccaaaatttaacaataaaaacaacatatgtattaaaaagatcaatgtagaacatttcaatgcagctatcacgaaattgtcaacaaaa |
40652855 |
T |
|
| Q |
330 |
aataaatgtagctatcacgaatgga--nnnnnnnaaaaataatctaattgagtgtatttaagaattcgttcgaaccataatttttctcattgattatacg |
427 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40652854 |
aataaatgtagctatcacgaatggattttttttttaaaataatctaattgagtgtatttaagaattcgttcaaaccataatttttctcattgattatacg |
40652755 |
T |
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| Q |
428 |
cgtcattgt |
436 |
Q |
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||||||||| |
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| T |
40652754 |
cgtcattgt |
40652746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 29279857 - 29279748
Alignment:
| Q |
1 |
caaaaacccatttatgtttctctgatattacaatatgtaaacgatcttcaccagctctaccttgtgcccattgaagattctcacttcccataaaaaacaa |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29279857 |
caaaaacccatttatatttctctgatattacaatatgtaaacgatcttcaccagctctaccttgtgcccattgaagattctcacttcccataaaaaacaa |
29279758 |
T |
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| Q |
101 |
accaccacct |
110 |
Q |
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|||||||||| |
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| T |
29279757 |
accaccacct |
29279748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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