View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9062_low_4 (Length: 216)
Name: NF9062_low_4
Description: NF9062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9062_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 12123023 - 12122836
Alignment:
| Q |
18 |
attagagatttctcgagcttatagtgagatagattatgtttaatactgataacttttcatatgcttgtgacattagaacaattagactaatgcatatcat |
117 |
Q |
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| T |
12123023 |
attagagatttctcgagcttatagtgagatagattatgtttaatactgataacttttcatatgcttgtgacattagaacaattggactaatgcatatcat |
12122924 |
T |
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| Q |
118 |
gtttaatactaagaacttctcttttgtatggtggtgacaagatctcatgaaacttggagtttaaaaacaattcatttccctctgctac |
205 |
Q |
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| T |
12122923 |
gtttaatactaagaacttcttttttgtatggtggtgacaagatctcatgaaacttggagtttaaaaacaattaatttccctctgctac |
12122836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 107 - 205
Target Start/End: Complemental strand, 1513230 - 1513135
Alignment:
| Q |
107 |
atgcatatcatgtttaatactaagaacttctcttttgtatggtggtgacaagatctcatgaaacttggagtttaaaaacaattcatttccctctgctac |
205 |
Q |
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| T |
1513230 |
atgcatatcatgtttaataccaagaacttct---ttctatggtggtgacaagatctcatgaaacttagaatttaaaaacaattagtttccctctgctac |
1513135 |
T |
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