View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9063_high_2 (Length: 651)
Name: NF9063_high_2
Description: NF9063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9063_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 18)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 112 - 634
Target Start/End: Original strand, 5500731 - 5501253
Alignment:
| Q |
112 |
cacagatgacatattaggcctatcttctggtagctgttgcacacacaatagaccaacatgaataaatcttattatttctgaacatatggcgtcatcatca |
211 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| |||||| |||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
5500731 |
cacagatgacatgttaggcctattttctggtttctgttgtacacacaatagacccacatgaataaatcttagtatttctgtacatatggcgtcatcatca |
5500830 |
T |
|
| Q |
212 |
tataatatgtctgctattaattccagtggtctttcttcaatccatagtctccatgcctaaaatgacatcaaagtcacaacatgagtaagctcaacactta |
311 |
Q |
| |
|
||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5500831 |
tataatacgtcagctattaactccagtggtctttcttcaatccatagtctccatgcctaaaatgacatcaaagttacaacatgagtaagctcaacactta |
5500930 |
T |
|
| Q |
312 |
taatgtggattttgattgattgatttattgtgtgttagtatgtgtggagttcactttaaactattatcatcatataaattagttttcattttgaattcct |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5500931 |
taatgtggattttgattgattgatttattgtgtgttagtatgtgtggagttcactttaaactatcatcatcatataaattagttttcattttgaattcct |
5501030 |
T |
|
| Q |
412 |
tcccatgcagaagatttattgagaccnnnnnnngggatataagaaaagcaactaaaaaggatacagtgtgtcacaagatagagaaacatatacacttcca |
511 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5501031 |
tcccatgcagaagatttattgagaccaaaaaaagggatataagaaaagcaactaaaaaggatacagtgtgtcacaagatagagaaacatatacacttcca |
5501130 |
T |
|
| Q |
512 |
aacttacatgaccaagaaggttaaggcgatgtagagggtcacgaaatccatgattctttctaccgctaattatctcaagtacaacgactccaaaactata |
611 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
5501131 |
aacttacatgaccaagaaggttaagacggtgtagtgggtcgcgaaatccatgattctttctaccgctaattatctcaagtagaacaactccaaaactata |
5501230 |
T |
|
| Q |
612 |
aacatcagattttatggagaagg |
634 |
Q |
| |
|
||||||||||||||| ||||||| |
|
|
| T |
5501231 |
aacatcagattttattgagaagg |
5501253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 112 - 634
Target Start/End: Original strand, 5487914 - 5488438
Alignment:
| Q |
112 |
cacagatgacatattaggcctatcttctggtagctgttgcacacacaatagaccaacatgaataaatcttattatttctgaacatatggcgtcatcatca |
211 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5487914 |
cacagatgacatgttaggcctattttctggtagctgttgcacacacaatagaccaacatgaataaatcttattatttctgaacatatggcctcatcatca |
5488013 |
T |
|
| Q |
212 |
tataatatgtctgctattaattccagtggtctttcttcaatccatagtctccatgcctaaaatgacatcaaagtcacaacatgagtaagctcaacactta |
311 |
Q |
| |
|
||||||| ||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5488014 |
tataatacgtcagctattaactccagtggtctttcttcaatccatagtttccatgcctaaaatgacatcaaagttacaacatgagtaagctcaacactta |
5488113 |
T |
|
| Q |
312 |
taatgtggattttgattgattgattta--ttgtgtgttagtatgtgtggagttcactttaaactattatcatcatataaattagttttcattttgaattc |
409 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| |||||| || ||||||||||| |||||||||||||||||| || |
|
|
| T |
5488114 |
taatgtggattttgattgattgatttattttgtgtgttggtaagtgtggagttcattttaaattagtatcatcatatgaattagttttcattttgagttt |
5488213 |
T |
|
| Q |
410 |
cttcccatgcagaagatttattgagaccnnnnnnngggatataagaaaagcaactaaaaaggatacagtgtgtcacaagatagagaaacatatacacttc |
509 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||| | |||||||||||||| | | |||||||||||||||||||||||||||||||||| |
|
|
| T |
5488214 |
cttcccatgcagtagatttattgagacccaaaaaagggatatatggaaagcaactaaaaaataaatagtgtgtcacaagatagagaaacatatacacttc |
5488313 |
T |
|
| Q |
510 |
caaacttacatgaccaagaaggttaaggcgatgtagagggtcacgaaatccatgattctttctaccgctaattatctcaagtacaacgactccaaaacta |
609 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| || |
|
|
| T |
5488314 |
aaaacttacatgaccaagaaggttaagacgatgtagagggtcacgaaatccatgattctttctaccgctaattatctcaagtagaacaactccaaagctg |
5488413 |
T |
|
| Q |
610 |
taaacatcagattttatggagaagg |
634 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
5488414 |
aaaacatcagattttattgagaagg |
5488438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 112 - 632
Target Start/End: Original strand, 5523599 - 5524123
Alignment:
| Q |
112 |
cacagatgacatattaggcctatcttctggtagctgttgcacacacaatagaccaacatgaataaatcttattatttctgaacatatggcgtcatcatca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5523599 |
cacagatgacatattaggcctatcttctggtagctgctgtacgcacaatagaccaacatgaataaatcttattatttctgaacatatggcctcatcatca |
5523698 |
T |
|
| Q |
212 |
tataatatgtctgctattaattccagtggtctttcttcaatccatagtctccatgcctaaaatgacatcaaagtcacaacatgagtaagctcaacactta |
311 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||| ||||| || |
|
|
| T |
5523699 |
tataatatgtctgctattaactccagtggtctttcttcaatccatagtttccatgccttaaatgacatcaaagttacaacatgagtaagctaaacacata |
5523798 |
T |
|
| Q |
312 |
taatgtggattttgattgattgattta--ttgtgtgttagtatgtgtggagttcactttaaactattatcatcatataaattagttttcattttgaattc |
409 |
Q |
| |
|
||||||| |||||||||||||| |||| ||||||| | |||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||| |
|
|
| T |
5523799 |
taatgtgaattttgattgattggtttattttgtgtgctggtatgtgtggagttcactttaaacaattatcatggtatgaattagttttcattttgaattt |
5523898 |
T |
|
| Q |
410 |
cttcccatgcagaagatttattgagaccnnnnnnngggatataagaaaagcaactaaaaa--ggatacagtgtgtcacaagatagagaaacatatacact |
507 |
Q |
| |
|
|||| ||||||||| |||||||||||| || ||||| | |||||||||||||| ||||| |||| |||||||||||||||||||| |
|
|
| T |
5523899 |
cttcacatgcagaacatttattgagactaaaaaaaggaatatatggaaagcaactaaaaaataaatacaatgtggtggaagatagagaaacatatacatg |
5523998 |
T |
|
| Q |
508 |
tccaaacttacatgaccaagaaggttaaggcgatgtagagggtcacgaaatccatgattctttctaccgctaattatctcaagtacaacgactccaaaac |
607 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5523999 |
tcaaaacttacatgaccaagaaggttaagacgatgtagagggtcacgaaatccatgattctttctaccgctaattatctcaagtacaacgactccaaagc |
5524098 |
T |
|
| Q |
608 |
tataaacatcagattttatggagaa |
632 |
Q |
| |
|
|| |||||||||||||||| ||||| |
|
|
| T |
5524099 |
taaaaacatcagattttattgagaa |
5524123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 112 - 632
Target Start/End: Original strand, 5482489 - 5483009
Alignment:
| Q |
112 |
cacagatgacatattaggcctatcttctggtagctgttgcacacacaatagaccaacatgaataaatcttattatttctgaacatatggcgtcatcatca |
211 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||| |||| | |||||||| |
|
|
| T |
5482489 |
cacagatgacatgttaggcctattttctggtttctgttgaacacacaatagaccaacatgaataaatcttattatttttgaagatat---gacatcatca |
5482585 |
T |
|
| Q |
212 |
tataatatgtctgctattaattccagtggtctttcttcaatccatagtctccatgcctaaaatgacatcaaagtcacaacatgagtaagctc----aaca |
307 |
Q |
| |
|
|| ||||||| |||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||| | || |
|
|
| T |
5482586 |
tacgatatgtcagctattaactccagtgtccttccttcaatccatagtctccatgcctaaaatgacatcaaagttacaacaagagaaagctcatcaatca |
5482685 |
T |
|
| Q |
308 |
cttataatgtggattttgattgattgattta--ttgtgtgttagtatgtgtggagttcactttaaactattatcatcatataaattagttttcattttga |
405 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
5482686 |
cttataaagtggattttgattgattgatttattttgtgtgtaggtatgtgtggagttcactttaaactattttcatcatatgaattagttttcattttga |
5482785 |
T |
|
| Q |
406 |
attccttcccatgcagaagatttattgagaccnnnnnnngggatataagaaaagcaactaaaaaggatacagtgtgtcacaagatagagaaacatataca |
505 |
Q |
| |
|
||| | |||||| | | |||| ||||||| | |||||||| | ||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
5482786 |
atttcctcccat--acatgattcattgaga-caaaaaaagggatatatggaaagcaactaaaataaatacagtgtatcacaagatagagaaacatataca |
5482882 |
T |
|
| Q |
506 |
cttccaaacttacatgaccaagaaggttaaggcgatgtagagggtcacgaaatccatgattctttctaccgctaattatctcaagtacaacgactccaaa |
605 |
Q |
| |
|
|||| ||||||||||| ||||||||||| | ||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5482883 |
cttcaaaacttacatggccaagaaggtttaaatgatgtcgagggtcacaaaatccgcgattctttctaccgctaattatctcaagtacaacgactccaaa |
5482982 |
T |
|
| Q |
606 |
actataaacatcagattttatggagaa |
632 |
Q |
| |
|
||| |||||||||||||||| ||||| |
|
|
| T |
5482983 |
gctaaaaacatcagattttattgagaa |
5483009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 112 - 285
Target Start/End: Complemental strand, 5856252 - 5856079
Alignment:
| Q |
112 |
cacagatgacatattaggcctatcttctggtagctgttgcacacacaatagaccaacatgaataaatcttattatttctgaacatatggcgtcatcatca |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5856252 |
cacagatgacatattaggcctatcttctggtagctgttgtacacacaatagaccaacatgaataaatcttattatttctgaacatatgggctcatcatcg |
5856153 |
T |
|
| Q |
212 |
tataatatgtctgctattaattccagtggtctttcttcaatccatagtctccatgcctaaaatgacatcaaagt |
285 |
Q |
| |
|
| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5856152 |
tctaatatgtctgctattaactctagtggtctttcttcaatccatagtctccatgcctaaaatgacatcaaagt |
5856079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 112 - 340
Target Start/End: Original strand, 20341521 - 20341746
Alignment:
| Q |
112 |
cacagatgacatattaggcctatcttctggtagctgttgcacacacaatagaccaacatgaataaatcttattatttctgaacatatggcgtcatcatca |
211 |
Q |
| |
|
|||||||||||| |||||||||| ||||| | |||||| |||||||||| ||| |||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
20341521 |
cacagatgacatgttaggcctattttctgctttctgttgtacacacaataaacccacatgaataaatcttattatatctgaacatatggcctcatcat-- |
20341618 |
T |
|
| Q |
212 |
tataatatgtctgctattaattccagtggtctttcttcaatccatagtctccatgcctaaaatgacatcaaagtcacaacatgagtaagctcaacactta |
311 |
Q |
| |
|
|| ||||||| |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||| || |||| | |||||||||||||| ||| |
|
|
| T |
20341619 |
-atgatatgtcagctattaactcctttgccctttcttcaatccatagtctccatgcctaaaatgacatcaaggttacaaaaagagtaagctcaacattta |
20341717 |
T |
|
| Q |
312 |
taatgtggattttgattgattgatttatt |
340 |
Q |
| |
|
| | |||||||||||||||||| |||||| |
|
|
| T |
20341718 |
tgaagtggattttgattgattggtttatt |
20341746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 480 - 632
Target Start/End: Original strand, 5444466 - 5444618
Alignment:
| Q |
480 |
tgtcacaagatagagaaacatatacacttccaaacttacatgaccaagaaggttaaggcgatgtagagggtcacgaaatccatgattctttctaccgcta |
579 |
Q |
| |
|
||||| |||||| | ||| ||||| ||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
5444466 |
tgtcataagataaaaaaagatataaacttcaaaacttacatgaccaagaaggtttagacgatgaagagggtcacgaaatccgcgattcttcctaccgcta |
5444565 |
T |
|
| Q |
580 |
attatctcaagtacaacgactccaaaactataaacatcagattttatggagaa |
632 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
5444566 |
attatctcaagtacaacgactccaaaactaaaaacatcagattttattgagaa |
5444618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 112 - 437
Target Start/End: Original strand, 5452645 - 5452969
Alignment:
| Q |
112 |
cacagatgacatattaggcctatcttctggtagctgttgcacacacaatagaccaacatgaataaatcttattatttctgaacatatggcgtcatcatca |
211 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||| || ||||| | | ||||| |
|
|
| T |
5452645 |
cacagatgacatgttaggcctattttctggtttctgttgtacacacaatagaccaacatgaataaatcttattatttcggagcatattg---cctcatcg |
5452741 |
T |
|
| Q |
212 |
tataatatgtctgctattaattccagtggtctttcttcaatccatagtctccatgcctaaaatgacatcaaagtcaca-acatgagtaagctcaacactt |
310 |
Q |
| |
|
||||| ||||| |||||||| ||| ||| || |||||||||| |||||||||||||||||||||||||| || ||| ||| |||||||||||| | | |
|
|
| T |
5452742 |
tataacatgtcagctattaactcctctggcctgccttcaatccacagtctccatgcctaaaatgacatcaaggttacagaca-gagtaagctcaa-tcct |
5452839 |
T |
|
| Q |
311 |
ataatgtggattttgattgattgatttattgt--gtgttagtatgtgtggagttcactttaaactatta-tcatcatataaattagttttcattttgaat |
407 |
Q |
| |
|
|||| |||||||||| |||||||||||||| | |||| ||||||||||||| ||||| || ||||| |||| |||| ||| | | ||| |||||||| |
|
|
| T |
5452840 |
ataaagtggattttggttgattgatttatttttagtgtatgtatgtgtggagtctactttcaattattattcatgatatgaataaatattccttttgaat |
5452939 |
T |
|
| Q |
408 |
tccttcccatgcagaagatttattgagacc |
437 |
Q |
| |
|
| || |||| ||||| ||||| ||||||| |
|
|
| T |
5452940 |
tttttaccatccagaaaatttactgagacc |
5452969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 478 - 632
Target Start/End: Original strand, 5452988 - 5453142
Alignment:
| Q |
478 |
tgtgtcacaagatagagaaacatatacacttccaaacttacatgaccaagaaggttaaggcgatgtagagggtcacgaaatccatgattctttctaccgc |
577 |
Q |
| |
|
||||||| |||||||| ||||||||| ||||| ||||||||||||||||||||||| | |||| |||||||||| |||||| ||||||| ||||||| |
|
|
| T |
5452988 |
tgtgtcataagatagaaaaacatataaacttcaaaacttacatgaccaagaaggtttcgatgatgcagagggtcacaaaatccgcgattcttcctaccgc |
5453087 |
T |
|
| Q |
578 |
taattatctcaagtacaacgactccaaaactataaacatcagattttatggagaa |
632 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
5453088 |
taattatctcaagtacaacgactccaaaactaaaaacatcagattttattgagaa |
5453142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 114 - 305
Target Start/End: Complemental strand, 5851214 - 5851023
Alignment:
| Q |
114 |
cagatgacatattaggcctatcttctggtagctgttgcacacacaatagaccaacatgaataaatcttattatttctgaacatatggcgtcatcatcata |
213 |
Q |
| |
|
|||||||||| |||||||||| ||||||| |||||| ||||||| ||||||||| |||| |||||||||||||| |||||||||||| |||||||| || |
|
|
| T |
5851214 |
cagatgacatgttaggcctattttctggtttctgttgtacacacagtagaccaacgtgaagaaatcttattatttttgaacatatggcctcatcatcgta |
5851115 |
T |
|
| Q |
214 |
taatatgtctgctattaattccagtggtctttcttcaatccatagtctccatgcctaaaatgacatcaaagtcacaacatgagtaagctcaa |
305 |
Q |
| |
|
|||||||| ||||| || || ||||| |||||||| ||||||||||||||||||| ||||||||| ||| | ||| || || ||||||||| |
|
|
| T |
5851114 |
taatatgttagctatgaactctagtggcctttcttcgatccatagtctccatgcctgaaatgacataaaatttacatcaagaataagctcaa |
5851023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 116 - 282
Target Start/End: Original strand, 5444253 - 5444416
Alignment:
| Q |
116 |
gatgacatattaggcctatcttctggtagctgttgcacacacaatagaccaacatgaataaatcttattatttctgaacatatggcgtcatcatcatata |
215 |
Q |
| |
|
|||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | |||||||||| |
|
|
| T |
5444253 |
gatgacatgttaggcctattttccggtagctgttgcacacacaatagaccaacatgaataaatcttattatttctgaacacattg---cctcatcatata |
5444349 |
T |
|
| Q |
216 |
atatgtctgctattaattccagtggtctttcttcaatccatagtctccatgcctaaaatgacatcaa |
282 |
Q |
| |
|
||||||| || ||||| ||| ||| || |||||||||| | | |||||||||||||||||||||| |
|
|
| T |
5444350 |
atatgtcagccattaactcctctggcctgccttcaatccacaatttccatgcctaaaatgacatcaa |
5444416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 112 - 285
Target Start/End: Complemental strand, 5804650 - 5804480
Alignment:
| Q |
112 |
cacagatgacatattaggcctatcttctggtagctgttgcacacacaatagaccaacatgaataaatcttattatttctgaacatatggcgtcatcatca |
211 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| |||||| ||||||||||| ||||||||||||||||||||||||| |||| |||| ||||| |||| |
|
|
| T |
5804650 |
cacagatgacatgttaggcctattttctggtttctgttgtacacacaatagcccaacatgaataaatcttattatttttgaagatat---gtcattatca |
5804554 |
T |
|
| Q |
212 |
tataatatgtctgctattaattccagtggtctttcttcaatccatagtctccatgcctaaaatgacatcaaagt |
285 |
Q |
| |
|
||||||||||| || | || ||| ||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5804553 |
tataatatgtcagcaagcaactcctctggcctttgctcaatccatagtctccatgcctaaaatgacatcaaagt |
5804480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 112 - 285
Target Start/End: Complemental strand, 5830395 - 5830225
Alignment:
| Q |
112 |
cacagatgacatattaggcctatcttctggtagctgttgcacacacaatagaccaacatgaataaatcttattatttctgaacatatggcgtcatcatca |
211 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||| |
|
|
| T |
5830395 |
cacagatgacatgttaggcctattttctggtttctgttgtacacacaatagaccaacatgaataaatcttattatttttgaagatatgg---catcatca |
5830299 |
T |
|
| Q |
212 |
tataatatgtctgctattaattccagtggtctttcttcaatccatagtctccatgcctaaaatgacatcaaagt |
285 |
Q |
| |
|
|| ||||||| ||||| || ||||||| |||||||||||||||| || ||||||||||| |||||||||| |
|
|
| T |
5830298 |
tacgatatgtcagctatgaactccagtgacctttcttcaatccataatcgccatgcctaaagaaacatcaaagt |
5830225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 482 - 632
Target Start/End: Complemental strand, 5856033 - 5855883
Alignment:
| Q |
482 |
tcacaagatagagaaacatatacacttccaaacttacatgaccaagaaggttaaggcgatgtagagggtcacgaaatccatgattctttctaccgctaat |
581 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||| ||||||||||| || |||||| ||||||||| |||||| |||||| ||||||| || |
|
|
| T |
5856033 |
tcacaagatagagaaacatatacactccaaaacttacatgcccaagaaggtttagacgatgttgagggtcacaaaatccgctattcttcttaccgctgat |
5855934 |
T |
|
| Q |
582 |
tatctcaagtacaacgactccaaaactataaacatcagattttatggagaa |
632 |
Q |
| |
|
||||||||||||||||||||| || ||| |||||||||||||||| ||||| |
|
|
| T |
5855933 |
tatctcaagtacaacgactccgaagctaaaaacatcagattttattgagaa |
5855883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 476 - 632
Target Start/End: Complemental strand, 5850850 - 5850694
Alignment:
| Q |
476 |
agtgtgtcacaagatagagaaacatatacacttccaaacttacatgaccaagaaggttaaggcgatgtagagggtcacgaaatccatgattctttctacc |
575 |
Q |
| |
|
||||||| |||||||||| |||||||||||||| |||||||||||||||||||||| || || ||||||||| ||||||| ||||||| ||||| |
|
|
| T |
5850850 |
agtgtgtggcaagatagaggaacatatacacttcataacttacatgaccaagaaggtttagattgtgcagagggtcagaaaatccacgattcttcctacc |
5850751 |
T |
|
| Q |
576 |
gctaattatctcaagtacaacgactccaaaactataaacatcagattttatggagaa |
632 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||| |||||||||| ||||| ||||| |
|
|
| T |
5850750 |
gctaattatctcaagtacgacgactccgaaactaaaaacatcagactttattgagaa |
5850694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 496 - 632
Target Start/End: Original strand, 20341797 - 20341933
Alignment:
| Q |
496 |
aacatatacacttccaaacttacatgaccaagaaggttaaggcgatgtagagggtcacgaaatccatgattctttctaccgctaattatctcaagtacaa |
595 |
Q |
| |
|
|||| ||||||||| |||||||||| |||||| ||||| || ||||||||||||||| |||||| ||||||| || ||||||||||| ||||| |||| |
|
|
| T |
20341797 |
aacaaatacacttcaaaacttacataaccaaggaggtttagatgatgtagagggtcacaaaatccgcgattcttcctgccgctaattatttcaagcacaa |
20341896 |
T |
|
| Q |
596 |
cgactccaaaactataaacatcagattttatggagaa |
632 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
20341897 |
cgactccaaaactaaaaacatcagattttattgagaa |
20341933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 484 - 632
Target Start/End: Complemental strand, 5804306 - 5804158
Alignment:
| Q |
484 |
acaagatagagaaacatatacacttccaaacttacatgaccaagaaggttaaggcgatgtagagggtcacgaaatccatgattctttctaccgctaatta |
583 |
Q |
| |
|
|||||||||| || ||||| ||||| ||||||||||||||||||||||| || |||| |||| ||| |||||| ||||||| ||||||||||||| |
|
|
| T |
5804306 |
acaagatagaagaatatataaacttcaaaacttacatgaccaagaaggtttagatgatgctgaggatcagaaaatccgcgattcttcctaccgctaatta |
5804207 |
T |
|
| Q |
584 |
tctcaagtacaacgactccaaaactataaacatcagattttatggagaa |
632 |
Q |
| |
|
||||||||||||||||||| || ||| |||||||||||||||| ||||| |
|
|
| T |
5804206 |
tctcaagtacaacgactccgaagctaaaaacatcagattttatagagaa |
5804158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 511 - 632
Target Start/End: Complemental strand, 5830035 - 5829914
Alignment:
| Q |
511 |
aaacttacatgaccaagaaggttaaggcgatgtagagggtcacgaaatccatgattctttctaccgctaattatctcaagtacaacgactccaaaactat |
610 |
Q |
| |
|
||||||||||| ||||||||||| || |||| |||| |||| ||||||| ||||||| | |||||||| |||||||||||||| |||||||| ||| |
|
|
| T |
5830035 |
aaacttacatggccaagaaggtttagattatgttgaggatcacaaaatccacgattcttcgtgccgctaatgatctcaagtacaacaactccaaagctaa |
5829936 |
T |
|
| Q |
611 |
aaacatcagattttatggagaa |
632 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
5829935 |
aaacatcagattttattgagaa |
5829914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 30263425 - 30263330
Alignment:
| Q |
11 |
aagcagagaaaataatcaagaggaagagaagtactttcactgtttttctcactgaatggcttttagatatgcagctgaaattaagaggacatgagg |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30263425 |
aagcacagaaaataatcaagaggaagagaagtactttcactgtttttctcactgaatggcttttagatatgcagctgaaattaagaggacatgagg |
30263330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 30302670 - 30302575
Alignment:
| Q |
11 |
aagcagagaaaataatcaagaggaagagaagtactttcactgtttttctcactgaatggcttttagatatgcagctgaaattaagaggacatgagg |
106 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30302670 |
aagcacagaaaataatcaagaggaagagaagtactttcactgtttttctcactgaatggcttttagatatggagctgaaattaagaggacatgagg |
30302575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 30270328 - 30270241
Alignment:
| Q |
19 |
aaaataatcaagaggaagagaagtactttcactgtttttctcactgaatggcttttagatatgcagctgaaattaagaggacatgagg |
106 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||| | ||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
30270328 |
aaaataatcaagaggaagagaaatacttttactgtttttcttattgaatggctcttagatatggagctgaaattaagaggacatgagg |
30270241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 30281861 - 30281948
Alignment:
| Q |
19 |
aaaataatcaagaggaagagaagtactttcactgtttttctcactgaatggcttttagatatgcagctgaaattaagaggacatgagg |
106 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||| | ||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
30281861 |
aaaataatcaagaggaagagaaatacttttactgtttttcttattgaatggctcttagatatggagctgaaattaagaggacatgagg |
30281948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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