View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9063_high_4 (Length: 392)
Name: NF9063_high_4
Description: NF9063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9063_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 12 - 391
Target Start/End: Original strand, 5487555 - 5487936
Alignment:
| Q |
12 |
atggacatcaagtatcccataattctgttacattaaaacaataattgatttacaataccagatataaatggcatcttcttttgaataagtttttgaaatc |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5487555 |
atggacatcaagtatcccataattctgttacattacaacaataattgatttataataccagatataaatggcatcttcttttaaataagtttttgaaatc |
5487654 |
T |
|
| Q |
112 |
tgcttttacaacaggaatttaacaagaatcagactaaca--aaattacacatgtacaacacattagtgttctttgatctatctgtatcgataatatgaca |
209 |
Q |
| |
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| ||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
5487655 |
ttcttttacaacaggaatttatcaagaatcaggctaacataaaattacacatgtacaacacattagtgttctatgatctatctgtatcgataatatcaca |
5487754 |
T |
|
| Q |
210 |
cacagtggcattctatcgggcctctaccaatgagattgaagctttgcttattgaaaaatctttagatgaagattctatgctatttgtattatcccttgca |
309 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5487755 |
cacagtggcattctatcgggcctctaacaatgagattgaagcttcgcttattgaaaaatctttagatgaagattctatgctatttgttttatcccttgca |
5487854 |
T |
|
| Q |
310 |
gcatagaacccgggttcacttggtttggggagtaacttttcaccctttagcataaagaccacagatgacatattaggcctat |
391 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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|
| T |
5487855 |
gcatagaacccgggttcatttggtttggggagtaacttttcaccctttaacataaagaccacagatgacatgttaggcctat |
5487936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 31 - 392
Target Start/End: Original strand, 5523241 - 5523622
Alignment:
| Q |
31 |
taattctgttacattaaaacaataattgatttacaataccagatataaatggcatcttcttttgaataagtttttgaaatctgcttttacaacaggaatt |
130 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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|
| T |
5523241 |
taattctgttaaattacaacaataattgatttacaataccagatttaaatggcatcttcttttaaataagtatttgaaatctgcttttacaacaggaatt |
5523340 |
T |
|
| Q |
131 |
taacaagaatcagactaacaaaattacacatgtacaacacattagtgttctttgatctatctgtatcgata--------------------atatgacac |
210 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||| ||| |||| |||| |
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|
| T |
5523341 |
tatcaagaatcagactaataaaattacacatgtacaacacattagtgttctatgatctatctatatctatatttgtcaaaaccaaaatttaatatcacac |
5523440 |
T |
|
| Q |
211 |
acagtggcattctatcgggcctctaccaatgagattgaagctttgcttattgaaaaatctttagatgaagattctatgctatttgtattatcccttgcag |
310 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| | |||||||| | |||||||||||| |||| ||||||||||||||||||||||||| |
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|
| T |
5523441 |
acagtggcattctatcgggcctctaacaatgagattgaagcttcgtttattgaacactctttagatgaacattccatgctatttgtattatcccttgcag |
5523540 |
T |
|
| Q |
311 |
catagaacccgggttcacttggtttggggagtaacttttcaccctttagcataaagaccacagatgacatattaggcctatc |
392 |
Q |
| |
|
| ||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
5523541 |
cgtagaacccgggttcatttggtttcgggagtaacttttcaccctttaacataaagaccacagatgacatattaggcctatc |
5523622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 12 - 391
Target Start/End: Original strand, 5500353 - 5500753
Alignment:
| Q |
12 |
atggacatcaagtatcccataattctgttacattaaaacaataattgatttacaataccagatataaa-tggcatcttcttttgaataagtttttgaaat |
110 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||| |||||| | ||| |||||||||||||||| |
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|
| T |
5500353 |
atggacctcaagtatcctataattctgttacatttcaacaataattgatttacaataccagatagaaaatggcatagtaatttaaataagtttttgaaat |
5500452 |
T |
|
| Q |
111 |
ctgcttttacaacaggaatttaacaagaatcagactaacaaaattacacatgtacaacacattagtgttctttgatctatctgtatcgataat------- |
203 |
Q |
| |
|
|||| |||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||| ||| | |
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|
| T |
5500453 |
acactttaacaacaggaatttatcaagaatcagtaacataaaattacacatgtacaacacattagtgttctatgatctatctgtatctatatttgtcaaa |
5500552 |
T |
|
| Q |
204 |
-------------atgacacacagtggcattctatcgggcctctaccaatgagattgaagctttgcttattgaaaaatctttagatgaagattctatgct |
290 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||| | ||||||||||||||||||||||| |
|
|
| T |
5500553 |
acaagaatttagtatcacacacagtggcattctatcgggcctctaataatgagattgaagcttcaattattgaacactctttagatgaagattctatgct |
5500652 |
T |
|
| Q |
291 |
atttgtattatcccttgcagcatagaacccgggttcacttggtttggggagtaacttttcaccctttagcataaagaccacagatgacatattaggccta |
390 |
Q |
| |
|
|||| ||||||| ||||| || ||||||||||||||||||||||| || ||||||||||||||||||| |||||| |||||||||||||| ||||||||| |
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|
| T |
5500653 |
atttttattatcgcttgctgcgtagaacccgggttcacttggtttcggaagtaacttttcaccctttaacataaaaaccacagatgacatgttaggccta |
5500752 |
T |
|
| Q |
391 |
t |
391 |
Q |
| |
|
| |
|
|
| T |
5500753 |
t |
5500753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 210 - 392
Target Start/End: Complemental strand, 5856402 - 5856229
Alignment:
| Q |
210 |
cacagtggcattctatcgggcctctaccaatgagattgaagctttgcttattgaaaaatctttagatgaagattctatgctatttgtattatcccttgca |
309 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||| |||| | ||||||||| ||||| |||||||||||||||| |
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|
| T |
5856402 |
cacagtggcattctatcgggcctctaacaatgagattgaagcttcatttactgaacactctttagataaagatc---------ttgtattatcccttgct |
5856312 |
T |
|
| Q |
310 |
gcatagaacccgggttcacttggtttggggagtaacttttcaccctttagcataaagaccacagatgacatattaggcctatc |
392 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
5856311 |
gcgtagaacccgggttcatttggtttggggagtaacctttcaccctttaacataaagaccacagatgacatattaggcctatc |
5856229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 207 - 391
Target Start/End: Original strand, 5482327 - 5482511
Alignment:
| Q |
207 |
acacacagtggcattctatcgggcctctaccaatgagattgaagctttgcttattgaaaaatctttagatgaagattctatgctatttgtattatccctt |
306 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||| |||||||| | | ||| || ||||||| | ||||||| |||| ||| | | |
|
|
| T |
5482327 |
acacacagtggcattctatcgggcctgtaacaatgagattgaagcttcatttattgaacacttttttgaagaagattttgtgctattagtatcatctcct |
5482426 |
T |
|
| Q |
307 |
gcagcatagaacccgggttcacttggtttggggagtaacttttcaccctttagcataaagaccacagatgacatattaggcctat |
391 |
Q |
| |
|
| || ||||||||||||||| |||||||||||||||| ||||||||||||| |||||| |||||||||||||| |||||||||| |
|
|
| T |
5482427 |
cctgcgtagaacccgggttcatttggtttggggagtaaattttcaccctttaacataaaaaccacagatgacatgttaggcctat |
5482511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 5482117 - 5482247
Alignment:
| Q |
20 |
caagtatcccataattctgttacattaaaacaataattgatttacaataccagatataaatggcatcttcttttgaataagtttttgaaatctgctttta |
119 |
Q |
| |
|
||||||||| ||||||||||||||||| | ||||||||||||||| |||||||||||||||||| | ||||||| |||||||||||||||| |||||||| |
|
|
| T |
5482117 |
caagtatcctataattctgttacattacagcaataattgatttaccataccagatataaatggcctgttcttttaaataagtttttgaaatttgctttta |
5482216 |
T |
|
| Q |
120 |
caacaggaatttaacaagaatcagactaaca |
150 |
Q |
| |
|
||| ||||||||| || |||| | ||||||| |
|
|
| T |
5482217 |
caataggaatttatcacgaattatactaaca |
5482247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 274 - 391
Target Start/End: Complemental strand, 5830490 - 5830373
Alignment:
| Q |
274 |
gatgaagattctatgctatttgtattatcccttgcagcatagaacccgggttcacttggtttggggagtaacttttcaccctttagcataaagaccacag |
373 |
Q |
| |
|
||||||||| |||||||||||||| |||| ||| | |||||||||||||||| |||||||||||||||||| ||||||||||| | |||||| ||||||| |
|
|
| T |
5830490 |
gatgaagatcctatgctatttgtagtatctcttcctgcatagaacccgggtttacttggtttggggagtaaattttcacccttcaacataaaaaccacag |
5830391 |
T |
|
| Q |
374 |
atgacatattaggcctat |
391 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
5830390 |
atgacatgttaggcctat |
5830373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 210 - 391
Target Start/End: Original strand, 20341359 - 20341543
Alignment:
| Q |
210 |
cacagtggcattctatcgggcctctaccaatgagattgaagctttgcttattgaaaaatctttagatgaagattctatgctatttgtatt---atccctt |
306 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||| |||||||| | |||| || |||||| || | || ||||||| ||| ||| |
|
|
| T |
20341359 |
cacagtggcattctatcgggcctctaacaatgagactgaagcttcatttattgaacacacttttgaagaagatgctgttctgattgtattgttatctctt |
20341458 |
T |
|
| Q |
307 |
gcagcatagaacccgggttcacttggtttggggagtaacttttcaccctttagcataaagaccacagatgacatattaggcctat |
391 |
Q |
| |
|
| ||||||||||| |||||||||||| | ||||||||||| |||||||||| |||||| |||||||||||||| |||||||||| |
|
|
| T |
20341459 |
cctgcatagaacccaggttcacttggtgttgggagtaacttctcaccctttaacataaaaaccacagatgacatgttaggcctat |
20341543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 272 - 391
Target Start/End: Complemental strand, 5851313 - 5851194
Alignment:
| Q |
272 |
tagatgaagattctatgctatttgtattatcccttgcagcatagaacccgggttcacttggtttggggagtaacttttcaccctttagcataaagaccac |
371 |
Q |
| |
|
||||| ||||| ||||||||||||||| ||| || | || ||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||| | |
|
|
| T |
5851313 |
tagataaagatcctatgctatttgtatcatcttttcctgcgtagaacccgggtttacttggtttggggagtaaattttcaccctttagcataaaaaccgc |
5851214 |
T |
|
| Q |
372 |
agatgacatattaggcctat |
391 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
5851213 |
agatgacatgttaggcctat |
5851194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 272 - 391
Target Start/End: Complemental strand, 5804747 - 5804628
Alignment:
| Q |
272 |
tagatgaagattctatgctatttgtattatcccttgcagcatagaacccgggttcacttggtttggggagtaacttttcaccctttagcataaagaccac |
371 |
Q |
| |
|
|||||| |||| ||| ||||||||||| ||| | | | |||||||| || |||| |||||||||||||||||| ||||||||||||| |||||| ||||| |
|
|
| T |
5804747 |
tagatggagatcctacgctatttgtatcatctcctcctgcatagaagccaggtttacttggtttggggagtaaattttcaccctttaacataaaaaccac |
5804648 |
T |
|
| Q |
372 |
agatgacatattaggcctat |
391 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
5804647 |
agatgacatgttaggcctat |
5804628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 313 - 391
Target Start/End: Original strand, 5452589 - 5452667
Alignment:
| Q |
313 |
tagaacccgggttcacttggtttggggagtaacttttcaccctttagcataaagaccacagatgacatattaggcctat |
391 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||| |||||| |||||||||||||| |||||||||| |
|
|
| T |
5452589 |
tagaacccgggttcacttggttttgggagtaacttttcgccctttaacataaaaaccacagatgacatgttaggcctat |
5452667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 313 - 391
Target Start/End: Original strand, 5444193 - 5444271
Alignment:
| Q |
313 |
tagaacccgggttcacttggtttggggagtaacttttcaccctttagcataaagaccacagatgacatattaggcctat |
391 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||| ||||||| |||||| ||||| |||||||| |||||||||| |
|
|
| T |
5444193 |
tagaacccgggttcacttggtttcggaagtaacttttcgccctttaacataaaaaccaccgatgacatgttaggcctat |
5444271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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