View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9063_high_7 (Length: 299)
Name: NF9063_high_7
Description: NF9063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9063_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 284
Target Start/End: Complemental strand, 32948801 - 32948528
Alignment:
| Q |
11 |
aacctgtgaacatagaggtaatatttcattcctttaagtacaatcttttttatgtatggatcctctccctgaggtacttgtggagcnnnnnnngcttgct |
110 |
Q |
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| T |
32948801 |
aacctgtgaacatagaggtaatatttctttcctttaagtacaatcttttttatgtatggatcctctccctgaggtacttgtggagctttttttgcttgct |
32948702 |
T |
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| Q |
111 |
ctcttgagactgcatcaatatttattccccctccaatatcacctaatgcaacactcaaagtgtttcccaattccatcacagcattttccaacacagacat |
210 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
32948701 |
ctcttgagactgcatcaatagttattccccctccaatatcacctaatgcaacactcaaagtgtttcccaattccaccacaacattttccaacacagacat |
32948602 |
T |
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| Q |
211 |
tgcctctgaaaaatccttttgtgtgtttcccaagtttcccaaaacatagttaattgtcacctacacatatatgt |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32948601 |
tgcctctgaaaaatccttttgtgtgtttcccaagtttcccaaaacatagttaattgtcacctacacatatatgt |
32948528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 32942682 - 32942568
Alignment:
| Q |
11 |
aacctgtgaacatagaggtaatatttcattcctttaagtacaatcttttttatgtatggatcctctccctgaggtacttgtggagcnnnnnnngcttgct |
110 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
32942682 |
aacctgtgaacatagaggtaatatttctttcctttaagtacaatcttttttatgtatggatcctctccctgaggtacttgtggagctttttttgcttgtt |
32942583 |
T |
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| Q |
111 |
ctcttgagactgcat |
125 |
Q |
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| T |
32942582 |
ctcttgagactgcat |
32942568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 236 - 277
Target Start/End: Complemental strand, 32942508 - 32942467
Alignment:
| Q |
236 |
tttcccaagtttcccaaaacatagttaattgtcacctacaca |
277 |
Q |
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| T |
32942508 |
tttcccaagtttcccaaaacatagttaattgtcacctacaca |
32942467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 32935124 - 32935057
Alignment:
| Q |
11 |
aacctgtgaacatagaggtaatatttcattcctttaagtacaatcttttttatgtatggatcctctcc |
78 |
Q |
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||||| ||||||||||||| ||||| | |||| || ||||||| ||| ||||| |||||||||||||| |
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| T |
32935124 |
aacctatgaacatagaggtcatattgctttcccttgagtacaagcttctttatatatggatcctctcc |
32935057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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