View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9063_low_15 (Length: 335)
Name: NF9063_low_15
Description: NF9063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9063_low_15 |
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| [»] scaffold0049 (1 HSPs) |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 5 - 325
Target Start/End: Original strand, 40653213 - 40653533
Alignment:
| Q |
5 |
atcatcgttaatttaattaatattacattctaaatgaatattcttaaacctgttaagatagaaataaaaatctatgacaccacactgtaacatactttta |
104 |
Q |
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| T |
40653213 |
atcatcgttaatttaattaatattacattctaaatgaatattcttaaacctgttaagatagaaataacaatctaggacaccacactgtaacatactttta |
40653312 |
T |
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| Q |
105 |
tgttttcctgcacttgctttgtcaacaatttttatttgcatgcactgatagttttgtttcttcttccaattggattaggggagagcgaactgtgaaatca |
204 |
Q |
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| T |
40653313 |
tgttttcctgcacttgctttgtcaacaatttttatttgcatgcactgatagttttgtttcttcttccaattggatcaggggagagcgaactgtgaaatca |
40653412 |
T |
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| Q |
205 |
ttgcgactttcaaaggcattgacagtgcctgaaacaacaacagtctatgaagcttgtcgtcgaatggctgttcgcagagtagatgctctgttactaactg |
304 |
Q |
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| T |
40653413 |
ttgcgactttcaaaggcattgacagtgcctgaaacaacaacagtctatgaagcttgtcgtcgaatggctgttcgcagagtagatgctctgttactaactg |
40653512 |
T |
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| Q |
305 |
attctaatgctttgctctgtg |
325 |
Q |
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| T |
40653513 |
attctaatgctttgctctgtg |
40653533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 313
Target Start/End: Original strand, 45427850 - 45427979
Alignment:
| Q |
184 |
ggagagcgaactgtgaaatcattgcgactttcaaaggcattgacagtgcctgaaacaacaacagtctatgaagcttgtcgtcgaatggctgttcgcagag |
283 |
Q |
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| T |
45427850 |
ggagagcggacagtgaagtcattgcgactttcgaaagccctgacagtacctgaaacaacaactgtatatgaagcctgtcgtcggatggctgcccgtaggg |
45427949 |
T |
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| Q |
284 |
tagatgctctgttactaactgattctaatg |
313 |
Q |
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| T |
45427950 |
tggatgctctattactcaccgattctaatg |
45427979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 313
Target Start/End: Complemental strand, 4458 - 4392
Alignment:
| Q |
247 |
gtctatgaagcttgtcgtcgaatggctgttcgcagagtagatgctctgttactaactgattctaatg |
313 |
Q |
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| T |
4458 |
gtctatgaaacttgttgtcgaatggctgtttgcaaagtagatgctctatttctaactgattcgaatg |
4392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 313
Target Start/End: Original strand, 144731 - 144797
Alignment:
| Q |
247 |
gtctatgaagcttgtcgtcgaatggctgttcgcagagtagatgctctgttactaactgattctaatg |
313 |
Q |
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| T |
144731 |
gtctatgaaacttgttgtcgaatggctgtttgcaaagtagatgctctatttctaactgattcgaatg |
144797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 33230910 - 33230845
Alignment:
| Q |
248 |
tctatgaagcttgtcgtcgaatggctgttcgcagagtagatgctctgttactaactgattctaatg |
313 |
Q |
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|||||||| ||||| |||||||| ||||| ||| |||||| ||||| || ||||||||||| |||| |
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| T |
33230910 |
tctatgaaacttgttgtcgaatgactgtttgcaaagtagaagctctatttctaactgattcgaatg |
33230845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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