View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9063_low_2 (Length: 1160)
Name: NF9063_low_2
Description: NF9063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9063_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 686; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 686; E-Value: 0
Query Start/End: Original strand, 84 - 1142
Target Start/End: Original strand, 29269413 - 29270498
Alignment:
| Q |
84 |
acaggtctagaattttctatatttnnnnnnntaattcttgtattcacattattgaaatatatgaatatgtatgttaattcatttttatacgtgatatcac |
183 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29269413 |
acaggtctagaattttctatatttaaaaaaataattcttgtattcacattattgaaatatattaatatgtatgttaattcatttttatacgtgatatcac |
29269512 |
T |
|
| Q |
184 |
g----------gggtctttatgttttcttggttacaacctcttaggactttttagcacccacttatttgttcaattgatgcctttgattgtttgaattat |
273 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29269513 |
aagctatcaccgggtctttatgttttcttggttacaaccacttaggactttttagcccccacttatttgttcaattgatgcctttgattgtttgaattat |
29269612 |
T |
|
| Q |
274 |
tgtcacttgataatgttcattgtattgtgtgacattgttcatcatatatgcgacattgttcatcgtactattgacactatttactattgagttgtatcgt |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29269613 |
tgtcacttgataatgttcattgtattgtgtgacattgttcatcatatatgcgacaatgttcatcgtactattgacactatttactattgagttgtatcgt |
29269712 |
T |
|
| Q |
374 |
ttatctcagtatgttacttgcacatggttaggaggaacatggtttgtggtgcacatgaattgtatgatgacgtgcttgaaagaggaatttatggcgattg |
473 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29269713 |
ttatctcagtatgttacttgcacatggttaggaggaacatggtttgtggtgcacatgaattgtatgatgaggtgcttgaaagaggaatttatggcgattg |
29269812 |
T |
|
| Q |
474 |
gaagagnnnnnnnnnnnnggagaaatttgaggaggtttggaagttttttcaaggaggttaagggtagatcgtaggagcttgatgtaaatgtgtata--at |
571 |
Q |
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||| | ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
29269813 |
gaaaa------aaaaaacagagaaatttgaggaggtttggaagttttttcgaggaggctaagggtagatcgtaggagcttgatgtaaatgtgtataatat |
29269906 |
T |
|
| Q |
572 |
attgttttctaggaggcttgtaataggtcggactttgattttgacatgtgatttgttgaaggagttgagggaattgggatgggtaccgtttgagggtatt |
671 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
29269907 |
attgttttctaggaggcttgtaataggtcggactttgattttgacgtgtgatttgttgaaggagttgagggaattgggatgggtaccgtatgaggatatt |
29270006 |
T |
|
| Q |
672 |
gtggtaattattgttgcgcgaagctgataaatcttgtagaggcatcgaggcttaatgactagatggtgaacgttgatttaccgatgaatgtaattgttgc |
771 |
Q |
| |
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||||||||| ||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29270007 |
gtggtaattgttgttgcacgaagctgataaatcttgtagaggcgtcgaggtttaatgactagatggtgagcgttgatttaccgatgaatgtaattgttgc |
29270106 |
T |
|
| Q |
772 |
aagaagtttgatgaaaggatattgtgttctaggatatgtgatt-------cgcacttgtttgatgagattgttgagggtgttgttgtttcatgcannnnn |
864 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
29270107 |
aagaagcttgatgaaaggatattgtgttctaggatatgtgattcttgcggcgcagttgtttgatgagattgttgagggtattgttgtttcatgcatggtt |
29270206 |
T |
|
| Q |
865 |
nnnngttttgttaaagaaaccaaactaggccaccgaaataggtacccgaaagaattaaatctgaaacaataagaggagcacactctaaggttacaaaaca |
964 |
Q |
| |
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||||||||||||||| ||| ||||||| |||||| | |||||||||||||||||||||| ||| ||||| ||||| |||||||||||| ||| || |
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| T |
29270207 |
tttttttttgttaaagaaactaaattaggccatcgaaattgatacccgaaagaattaaatctgagacattaagaagagcagactctaaggttataaatca |
29270306 |
T |
|
| Q |
965 |
ataccatcaaaccaactcaaatgaaaaatagagaaaacgcatgaacattccatctagatgaaactc----------------atatcttaattttaaatt |
1048 |
Q |
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| ||||||||||||||||||||| |||||||||||||||||||| ||||| || |||||||||| |||||||||||||||||| |
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| T |
29270307 |
acaccatcaaaccaactcaaatgggaaatagagaaaacgcatgaatgttccacctggatgaaactcatgggcatccatcccaatatcttaattttaaatt |
29270406 |
T |
|
| Q |
1049 |
ctctattggaaggatttcagaaacataatttgctataatttgtgtatggattgtttgataagtcacttgaaaatagtatcaccaatatcgtcat |
1142 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | || ||| ||||||||||||||| ||||||| |
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| T |
29270407 |
ctctattggaagaatttcagaaacataatttgctataatttgtgtatggattgtttgatacggcagttg--aatagtatcaccaatgtcgtcat |
29270498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 29269200 - 29269256
Alignment:
| Q |
16 |
gacacttcacttcttcatatttagaatgtgtaagctctaaccactaaactatttgac |
72 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||| |||| |||||||||| |
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| T |
29269200 |
gacacttcacttcttcatatttagaatgtgtaagttctaactactagactatttgac |
29269256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 1034 - 1139
Target Start/End: Original strand, 29272530 - 29272635
Alignment:
| Q |
1034 |
tcttaattttaaattctctattggaaggatttcagaaacataatttgctataatttgtgtatggattgtttgataagtcacttgaaaatagtatcaccaa |
1133 |
Q |
| |
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|||| ||| |||||||||| ||||||||||| || |||| ||||||||| || || |||||||||||||||| || || ||||| || |||||||||| |
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| T |
29272530 |
tcttcattgtaaattctctgttggaaggattccacgaacaaaatttgctagaacatgcgtatggattgtttgatgaggcagttgaacatggtatcaccaa |
29272629 |
T |
|
| Q |
1134 |
tatcgt |
1139 |
Q |
| |
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| |||| |
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| T |
29272630 |
tgtcgt |
29272635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 397 - 473
Target Start/End: Original strand, 29271929 - 29272005
Alignment:
| Q |
397 |
atggttaggaggaacatggtttgtggtgcacatgaattgtatgatgacgtgcttgaaagaggaatttatggcgattg |
473 |
Q |
| |
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|||||||||||||| |||||||||| ||||| | || |||||||||| || |||| ||||| |||||||| ||||| |
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| T |
29271929 |
atggttaggaggaatatggtttgtgatgcacgtcaactgtatgatgaaatggttgagagagggatttatggtgattg |
29272005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 31187544 - 31187488
Alignment:
| Q |
15 |
agacacttcacttcttcatatttagaatgtgtaagctctaaccactaaactatttga |
71 |
Q |
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||||||| ||||| | || ||||| ||||||| |||||||||||||||||||||||| |
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| T |
31187544 |
agacactccacttatccacatttaaaatgtgtgagctctaaccactaaactatttga |
31187488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 3039206 - 3039156
Alignment:
| Q |
22 |
tcacttcttcatatttagaatgtgtaagctctaaccactaaactatttgac |
72 |
Q |
| |
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||||||||||||||||| ||||||| |||| ||||||||||||| ||||| |
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|
| T |
3039206 |
tcacttcttcatatttaaaatgtgtgagcttcaaccactaaactacttgac |
3039156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 624554 - 624603
Alignment:
| Q |
23 |
cacttcttcatatttagaatgtgtaagctctaaccactaaactatttgac |
72 |
Q |
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| T |
624554 |
cacttctccacatttaaaatgtgtgagctctaaccactaaactacttgac |
624603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 42433096 - 42433039
Alignment:
| Q |
15 |
agacacttcacttcttcatatttagaatgtgtaagctctaaccactaaactatttgac |
72 |
Q |
| |
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|||||||||| |||| |||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
42433096 |
agacacttcatttctccatatttaaaatgtgtaagctctaaccactaaactacttgac |
42433039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 37104144 - 37104193
Alignment:
| Q |
23 |
cacttcttcatatttagaatgtgtaagctctaaccactaaactatttgac |
72 |
Q |
| |
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|||||||||||||||| ||||||| |||| ||||||||| | |||||||| |
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| T |
37104144 |
cacttcttcatatttaaaatgtgtgagctttaaccactagattatttgac |
37104193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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