View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9063_low_21 (Length: 269)
Name: NF9063_low_21
Description: NF9063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9063_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 40419920 - 40419677
Alignment:
| Q |
10 |
gcagagaatacaaagttctatgtcaaactgctagaatgattcgcggatcaatgtctgaaccttttattgattgacaacgatgtgtaaacctacttagact |
109 |
Q |
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| T |
40419920 |
gcagaaaatacaaagttatatgtcaaactgctagaatgatttgcggatcaatgtctaaaccttttattgattgacaacgatgtgtaaacctaattagact |
40419821 |
T |
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| Q |
110 |
ttatgcaaaaactcaaaaaggcgaaacttgtaccatttgaacacaaacgtattataggcatctgtcttcatatatatatttttgttttatcttataaagt |
209 |
Q |
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| T |
40419820 |
ttatgcaaaaactcaaaaaggcgaaacttgtaccatttgaacacaaacgtattataggcatctgtcttcatctatatatttttgttttatcttacaaagt |
40419721 |
T |
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| Q |
210 |
ctttatgaaaattatagtttttgcttcacatagtagcaagtata |
253 |
Q |
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| T |
40419720 |
ctttatgaaaattatagtttttgcttcacatagtagcaagtata |
40419677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 103 - 241
Target Start/End: Complemental strand, 40435569 - 40435438
Alignment:
| Q |
103 |
ttagactttatgcaaaaactcaaaaaggcgaaacttgtaccatttgaacacaaacgtattataggcatctgtcttcatatatatatttttgttttatctt |
202 |
Q |
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||||||||||||||||||||||||| || |||||||||||||| |||| ||||||||||||||||||||||||||| |||| ||||||||| |||| |
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| T |
40435569 |
ttagactttatgcaaaaactcaaaa-ggttaaacttgtaccattggaacgcaaacgtattataggcatctgtcttca----tataattttgttttgtctt |
40435475 |
T |
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| Q |
203 |
ataaagtctttatgaaaattatagtttttgcttcacata |
241 |
Q |
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| T |
40435474 |
agaaagtctttatcaaaat--tagttttcgcttcacata |
40435438 |
T |
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