View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9063_low_25 (Length: 257)
Name: NF9063_low_25
Description: NF9063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9063_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 2140968 - 2141209
Alignment:
| Q |
1 |
tattgttctatccttgaatgatcaagtccaaacacaaaccaagagggttcccgatcacttggttctatgatgataattgtttgtgtttgttggatatatg |
100 |
Q |
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| T |
2140968 |
tattgttctatccttgaatgatcaagtccaaacacaaaccaatgaggttcctgattacttggttctatgttcgtaattgtttgtgtttgttgggtat--g |
2141065 |
T |
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| Q |
101 |
gttttgctgtctatctttacataggtatagagttacccacatgaagagcaaaattccagttagtccccatactacttgnnnnnnntagatagttttattc |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||| |
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| T |
2141066 |
attttgctgtctatctttacatagggatagagttacccacatgaagagcaaaattccagttagtccccatatta---gaaaaaaacagatagttttattc |
2141162 |
T |
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| Q |
201 |
tttggagttgtaggatttccacctgtataattagaactgtagtataa |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2141163 |
tttggagttgtaggatttccacctgtataattagaactgtagtataa |
2141209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 2145502 - 2145745
Alignment:
| Q |
1 |
tattgttctatccttgaatgatcaagtccaaacacaaaccaagagggttcccgatcacttggttctatgatgataattgtttgtgtttgttggatatatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
2145502 |
tattgttctatccttgaatgatcaagtccaaacacaaaccaagagggttcccgatcacttggttctatgatgataattgtttgtgtttgctgg--atatg |
2145599 |
T |
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| Q |
101 |
gttttgctgtctatctttacataggtatagagttacccacatgaagagcaaaattccagttagtccccatactacttgnnnnnnntagatagttttattc |
200 |
Q |
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| T |
2145600 |
gttttgctgtctatctttacatagggatagagttacccccatgaggagcaaaattccagttactccccatactacttcaaaaaagtagatattttcatgc |
2145699 |
T |
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| Q |
201 |
tttggagttgtaggatttccacctgtataattagaactgtagtataa |
247 |
Q |
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|||||| ||| ||||||| | ||| || |||||||||| |||||||| |
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| T |
2145700 |
tttggacttggaggatttacgcctatagaattagaact-tagtataa |
2145745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 2149977 - 2150146
Alignment:
| Q |
1 |
tattgttctatccttgaatgatcaagtccaaacacaaaccaagagggttcccgatcacttggttctatgatgataattgtttgtgtttgttggatatatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||| | |||||||||||||||||||| |||| |
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| T |
2149977 |
tattgttctatccttgaatgatcaagtccaaacacaaaccaatgaggttcctgattacttggttctatgttcgtaattgtttgtgtttgttgg--gtatg |
2150074 |
T |
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| Q |
101 |
gttttgctgtctatctttacataggtatagagttacccacatgaagagcaaaattccagttagtccccatac |
172 |
Q |
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| T |
2150075 |
gttttgctgtctatctttacatacagataaagttacccacatgaagaacaaaagtccagatattccccatac |
2150146 |
T |
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