View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9063_low_29 (Length: 248)
Name: NF9063_low_29
Description: NF9063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9063_low_29 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 138 - 234
Target Start/End: Complemental strand, 13340586 - 13340488
Alignment:
| Q |
138 |
ctatattcaatagtttgttttca--tagaatgtttaagaaaagtataaatattttttaaaatgacaactttaattatttattaagagcatgatatatat |
234 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13340586 |
ctatattcaatagtttgttttcagatagaatgtttaagaaaagtaaaaatattttttaaaatgacaactttaattctttattaagagcatgatatatat |
13340488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 13340661 - 13340601
Alignment:
| Q |
1 |
tctttttaagtcaaacattatgatatgtttagcttagaaaataagaagataagaacgagat |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13340661 |
tctttttaagtcaaacattatgatatgtttagcttagaaaataagaagataagaacgagat |
13340601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University