View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9063_low_3 (Length: 892)

Name: NF9063_low_3
Description: NF9063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9063_low_3
NF9063_low_3
[»] chr4 (6 HSPs)
chr4 (469-878)||(52740601-52741010)
chr4 (338-496)||(52740443-52740601)
chr4 (18-189)||(52740120-52740292)
chr4 (634-861)||(13539369-13539596)
chr4 (425-500)||(13539187-13539262)
chr4 (525-604)||(13539272-13539351)
[»] chr2 (2 HSPs)
chr2 (347-878)||(45393871-45394399)
chr2 (18-92)||(45393602-45393676)
[»] chr8 (2 HSPs)
chr8 (395-857)||(35781972-35782431)
chr8 (119-170)||(35782578-35782629)
[»] chr7 (3 HSPs)
chr7 (634-861)||(9668345-9668572)
chr7 (425-500)||(9668163-9668238)
chr7 (525-604)||(9668248-9668327)
[»] chr1 (1 HSPs)
chr1 (434-599)||(47836263-47836428)


Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 469 - 878
Target Start/End: Original strand, 52740601 - 52741010
Alignment:
Q  469 ctcatatcatcaattgaatcattccaccaatcaccacccttgttgaaaatcttagccaaattttgaacatcttctagtttcttcttttccatctccaaca 568  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52740601 ctcatatcatcaattgaatcattccaccaatcaccacccttgttgaaaatcttagccaaattttgaacatcttctagtttcttcttttccatctccaaca 52740700  T
Q  569 tcttttgtgcctccacatattgtctattgtaatcttggtaggtcagaaaattttctgctacctttgaatcctcaaactcagtggttcctttgatgtagct 668  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52740701 tcttttgtgcctccacatattgtctattgtaatcttggtaggtcagaaaattttctgctacctttgaatcctcaaactcagtggttcctttgatgtagct 52740800  T
Q  669 gttgaggacagagtatgtgtcgggttggccaaaacaaaatagtttgtcaccaggagaaaacacaatgatggctgcatgaacatcacataagacacaaagt 768  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52740801 gttgaggacagagtatgtgtcgggttggccaaaacaaaatagtttgtcaccaggagaaaacacaatgatggctgcatgaacatcacataagacacaaagt 52740900  T
Q  769 tcgcttgcttttctgaataaaccttgtcttctttttgagaaagtcacttgtttctgtgattctttctcaaccttcttgatctcaatcttcttgcgtccca 868  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52740901 tcgcttgcttttctgaataaaccttgtcttctttttgagaaagtcacttgtttctgtgattctttctcaaccttcttgatctcaatcttcttgcgtccca 52741000  T
Q  869 tgttcttctt 878  Q
    ||||||||||    
T  52741001 tgttcttctt 52741010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 338 - 496
Target Start/End: Original strand, 52740443 - 52740601
Alignment:
Q  338 ttcttcgtcgatagctaataattctattctacggcatggcactttgcttcatgacaagttcatcagccctttcaacaagcttcctccttaactcataaat 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52740443 ttcttcgtcgatagctaataattctattctacggcatggcactttgcttcatgacaagttcatcagccctttcaacaagcttcctccttaactcataaat 52740542  T
Q  438 ggatatcataaattgttcaagttgatcactactcatatcatcaattgaatcattccacc 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52740543 ggatatcataaattgttcaagttgatcactactcatatcatcaattgaatcattccacc 52740601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 52740120 - 52740292
Alignment:
Q  18 atttggagacgtcgtgtagaatcaattccaaatatacatatcttaatcctcagaaataattttataggaaaagatcatgatgtcactatt-nnnnnnnnt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  52740120 atttggagacgtcgtgtagaatcaattccaaatatacatatcttaatcctcagaaataattttataggaaaagatcatgatgtcactattaaaaaaaaaa 52740219  T
Q  117 attcaaataagcatatggtgtgagaaaaagatccaaattaaattaccattaaacaaaatctcaactgcagtat 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52740220 attcaaataagcatatggtgtgagaaaaagatccaaattaaattaccattaaacaaaatctcaactgcagtat 52740292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 634 - 861
Target Start/End: Original strand, 13539369 - 13539596
Alignment:
Q  634 gaatcctcaaactcagtggttcctttgatgtagctgttgaggacagagtatgtgtcgggttggccaaaacaaaatagtttgtcaccaggagaaaacacaa 733  Q
    ||||||||||||||||||||| | ||||||||||| || || |  | ||   ||| |||||| ||||| ||||||||||||||    || |||||||| |    
T  13539369 gaatcctcaaactcagtggtttcgttgatgtagctattaagaattgtgtcgatgttgggttgaccaaagcaaaatagtttgtcggacggggaaaacacca 13539468  T
Q  734 tgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtcacttgtttctgtgattcttt 833  Q
      |||||| ||||  | |||||||||||||||||||| ||||||||| |||||| |||||||||||  |||||||| || |||||| | |  ||| ||||    
T  13539469 ccatggctacatgtgcgtcacataagacacaaagttcacttgcttttttgaatagaccttgtcttcgctttgagaatgtgacttgtctgttcgatgcttt 13539568  T
Q  834 ctcaaccttcttgatctcaatcttcttg 861  Q
     |||| |||||||||||| |||||||||    
T  13539569 gtcaatcttcttgatctcgatcttcttg 13539596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 425 - 500
Target Start/End: Original strand, 13539187 - 13539262
Alignment:
Q  425 ttaactcataaatggatatcataaattgttcaagttgatcactactcatatcatcaattgaatcattccaccaatc 500  Q
    ||||||| | |||||||  ||||||||||||||| |  ||| |||||||||||||||| |||||||||||||||||    
T  13539187 ttaactctttaatggattccataaattgttcaagctcttcaatactcatatcatcaatggaatcattccaccaatc 13539262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 525 - 604
Target Start/End: Original strand, 13539272 - 13539351
Alignment:
Q  525 caaattttgaacatcttctagtttcttcttttccatctccaacatcttttgtgcctccacatattgtctattgtaatctt 604  Q
    |||||||||||||||  ||||||||||||| |||  ||||||||| |||  ||||||| ||||| |||||||||| ||||    
T  13539272 caaattttgaacatcggctagtttcttcttctccgactccaacatttttaatgcctcctcatatcgtctattgtactctt 13539351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 347 - 878
Target Start/End: Original strand, 45393871 - 45394399
Alignment:
Q  347 gatagctaataattctattctacggcatggcactttgcttcatgacaagttcatcagccctttcaacaagcttcctccttaactcataaatggatatcat 446  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||    
T  45393871 gatagctaataattctattctagggcatgacactttgcttcatgacaagttcatcagccctttcaacaagcttcctccttaactcgtaaatggacaccat 45393970  T
Q  447 aaattgttcaagttgatcactactcatatcatcaattgaatcattccaccaatcaccacccttgttgaaaatcttagccaaattttgaacatcttctagt 546  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||   ||||||||||||||||||||||||||||||||||||||||    
T  45393971 aaattgttcaagctgatcactactcatatcatcaattgaatcattccaccagtcacc---cttgttgaaaatcttagccaaattttgaacatcttctagt 45394067  T
Q  547 ttcttcttttccatctccaacatcttttgtgcctccacatattgtctattgtaatcttggtaggtcagaaaattttctgctacctttgaatcctcaaact 646  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| | | ||| || |||||||||||  |||||||||||||||||    
T  45394068 ttcttcttttccgtctccaacatcttttgtgcctcctcatattgtctattgtaatctttgcaagtcggagaattttctgctgactttgaatcctcaaact 45394167  T
Q  647 cagtggttcctttgatgtagctgttgaggacagagtatgtgtcgggttggccaaaacaaaatagtttgtcaccaggagaaaacacaatgatggctgcatg 746  Q
    |||||||||||||||||||||| |||||||||  ||  ||||||||||| ||||||||  | |||||||||||||| |||||||||||||||||||||||    
T  45394168 cagtggttcctttgatgtagctattgaggacaacgttagtgtcgggttgcccaaaacagtagagtttgtcaccaggggaaaacacaatgatggctgcatg 45394267  T
Q  747 aacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtcacttgtttctgtgattctttctcaaccttcttg 846  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||| |  || ||||||||||||||||||    
T  45394268 aacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtgacaagtttgttggaatctttctcaaccttcttg 45394367  T
Q  847 atctcaatcttcttgcgtcccatgttcttctt 878  Q
    ||||||||||||| ||| ||||||||||||||    
T  45394368 atctcaatcttctggcgccccatgttcttctt 45394399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 45393602 - 45393676
Alignment:
Q  18 atttggagacgtcgtgtagaatcaattccaaatatacatatcttaatcctcagaaataattttataggaaaagat 92  Q
    |||| ||||||||  ||| ||||||||  ||| |||||||||||||||||| | |||||||||| ||||||||||    
T  45393602 atttagagacgtcaagtaaaatcaatttgaaacatacatatcttaatcctcggtaataattttacaggaaaagat 45393676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 2e-61; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 395 - 857
Target Start/End: Complemental strand, 35782431 - 35781972
Alignment:
Q  395 gttcatcagccctttcaacaagcttcctccttaactcataaatggatatcataaattgttcaagttgatcactactcatatcatcaattgaatcattcca 494  Q
    ||||||||||| ||||||  ||||||||| |||||||| |||||||   |||||||| |||||| ||||||||| |||| |||||||| || ||||||||    
T  35782431 gttcatcagccttttcaagtagcttcctctttaactcagaaatggactccataaattcttcaagctgatcactattcatctcatcaatagattcattcca 35782332  T
Q  495 ccaatcaccacccttgttgaaaatcttagccaaattttgaacatcttctagtttcttcttttccatctccaacatcttttgtgcctccacatattgtcta 594  Q
    ||| | |||   | | ||  ||||||||| |||||||| ||||||  | |||||||  |||||||| ||||||| |||| |||||||| |||||||| ||    
T  35782331 ccagttacc---catattccaaatcttagtcaaattttcaacatcagcaagtttctgtttttccatttccaacacctttagtgcctcctcatattgttta 35782235  T
Q  595 ttgtaatcttggtaggtcagaaaattttctgctacctttgaatcctcaaactcagtggttcctttgatgtagctgttgaggacagagtatgtgtcgggtt 694  Q
    ||||| |||| |||||||  | ||||| | | |   |||||| | ||||||||| ||||||| ||||||||||| || ||||    ||  ||||  ||||    
T  35782234 ttgtactctttgtaggtcgaagaatttcccgttgagtttgaaacatcaaactcaatggttccattgatgtagctattaaggatttggtcggtgtttggtt 35782135  T
Q  695 ggccaaaacaaaatagtttgtcaccaggagaaaacacaatgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttg 794  Q
      || |||||   ||||||| || ||||||||||||| ||||||||||||||||||||||||||    |||||||| || ||||||| ||||||||||||    
T  35782134 caccgaaacagtgtagtttgccagcaggagaaaacacgatgatggctgcatgaacatcacataaagtgcaaagttcactcgcttttcggaataaaccttg 35782035  T
Q  795 tcttctttttgagaaagtcacttgtttctgtgattctttctcaaccttcttgatctcaatctt 857  Q
    |||||||||||||||||| ||||| || |  | |||||| |||| ||| ||||||||||||||    
T  35782034 tcttctttttgagaaagtgacttgcttgttggtttctttttcaagctttttgatctcaatctt 35781972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 35782629 - 35782578
Alignment:
Q  119 tcaaataagcatatggtgtgagaaaaagatccaaattaaattaccattaaac 170  Q
    ||||||||||| ||||||||||||||| |||||||| |||||||||||||||    
T  35782629 tcaaataagcacatggtgtgagaaaaacatccaaataaaattaccattaaac 35782578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 2e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 634 - 861
Target Start/End: Original strand, 9668345 - 9668572
Alignment:
Q  634 gaatcctcaaactcagtggttcctttgatgtagctgttgaggacagagtatgtgtcgggttggccaaaacaaaatagtttgtcaccaggagaaaacacaa 733  Q
    ||||||||||||||||||||| | ||||||||||| || || |  | ||   ||| |||||| ||||| ||||||||||||||    || |||||||| |    
T  9668345 gaatcctcaaactcagtggtttcgttgatgtagctattaagaattgtgtcgatgttgggttgaccaaagcaaaatagtttgtcggacggggaaaacacca 9668444  T
Q  734 tgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtcacttgtttctgtgattcttt 833  Q
      |||||| ||||  | |||||||||||||||||||| ||||||||| |||||| |||||||||||  |||||||| || |||||| | |  ||| ||||    
T  9668445 ccatggctacatgtgcgtcacataagacacaaagttcacttgcttttttgaatagaccttgtcttcgctttgagaatgtgacttgtctgttcgatgcttt 9668544  T
Q  834 ctcaaccttcttgatctcaatcttcttg 861  Q
     |||| |||||||||||| |||||||||    
T  9668545 gtcaatcttcttgatctcgatcttcttg 9668572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 425 - 500
Target Start/End: Original strand, 9668163 - 9668238
Alignment:
Q  425 ttaactcataaatggatatcataaattgttcaagttgatcactactcatatcatcaattgaatcattccaccaatc 500  Q
    ||||||| | |||||||  ||||||||||||||| |  ||| |||||||||||||||| |||||||||||||||||    
T  9668163 ttaactctttaatggattccataaattgttcaagctcttcaatactcatatcatcaatggaatcattccaccaatc 9668238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 525 - 604
Target Start/End: Original strand, 9668248 - 9668327
Alignment:
Q  525 caaattttgaacatcttctagtttcttcttttccatctccaacatcttttgtgcctccacatattgtctattgtaatctt 604  Q
    |||||||||||||||  ||||||||||||| |||  ||||||||| |||  ||||||| ||||| |||||||||| ||||    
T  9668248 caaattttgaacatcggctagtttcttcttctccgactccaacatttttaatgcctcctcatatcgtctattgtactctt 9668327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 434 - 599
Target Start/End: Complemental strand, 47836428 - 47836263
Alignment:
Q  434 aaatggatatcataaattgttcaagttgatcactactcatatcatcaattgaatcattccaccaatcaccacccttgttgaaaatctt---agccaaatt 530  Q
    ||||||| | |||||||||||||||    |||||||||||||  ||||||||||||||||||||||   |||| || || |||| |||    |||||| |    
T  47836428 aaatggacaccataaattgttcaagcacttcactactcatattgtcaattgaatcattccaccaat---cacctttcttcaaaaacttggccgccaaaat 47836332  T
Q  531 ttgaacatcttctagtttcttcttttccatctccaacatcttttgtgcctccacatattgtctattgta 599  Q
    || | |||||  |||||||||||| || | ||| |||||||||  ||||||| ||||||||||||||||    
T  47836331 ttcagcatctgttagtttcttcttctctaactctaacatctttaatgcctcctcatattgtctattgta 47836263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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