View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9063_low_6 (Length: 635)
Name: NF9063_low_6
Description: NF9063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9063_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 13 - 413
Target Start/End: Complemental strand, 1510661 - 1510261
Alignment:
| Q |
13 |
agcagagattacttgtagcggtgcattttacaaatataagagaagttggtattggatgaaagcaaactcttgttttgttttacttgcatttactaaacaa |
112 |
Q |
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| T |
1510661 |
agcagagattacttggagcggtgcattttacaaatataagagaagttggtattggatgaaagcaaactcttgttttgttttacttgcatttactaaacaa |
1510562 |
T |
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| Q |
113 |
ttcatttgagattaggtctaaggattagttcttgagattatgcctttagttttctatgataattaaaaatttctgacttttgaaagttgcaataccaatt |
212 |
Q |
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| T |
1510561 |
ttcatttgagattaggtctaaggattagttcttgagattatgcctttagttttctatgataattaaaaatttctgacttttgaaagttgcaataccaatt |
1510462 |
T |
|
| Q |
213 |
aaatttctgtgattagtaaactgtaggatttctttgattattactgactttaattagtactaatttaagttgtgacgatatttgtagtaagtttaagatt |
312 |
Q |
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| T |
1510461 |
aaatttctgtgattagtaaactgtaggatttctttgattattactgactttaattagtactaatttaagttgtgacgatatttgtagtaagtttaagatt |
1510362 |
T |
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| Q |
313 |
tatcataaactttaactccttgtgcaagcatcaagcatgtctctgattttgctcattcctgaatattcatgcggcaagtaacttgtggatgttcttctgc |
412 |
Q |
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| T |
1510361 |
tgtcataaactttaactccttgtgcaagcatcaagcatgtctctgattttgctcattcctgaatattcatgcggcaagtaacttgtggatgttcttctgc |
1510262 |
T |
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| Q |
413 |
a |
413 |
Q |
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| T |
1510261 |
a |
1510261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 444 - 617
Target Start/End: Complemental strand, 1510263 - 1510090
Alignment:
| Q |
444 |
gcataaaatattttaggaagcttatatagtataccgatattaatcgtagatacgaaatgtttcagaccaataaatatacatgcgttattcttacagttta |
543 |
Q |
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| T |
1510263 |
gcataaaatattttaggaagcttatatagtataccgatattaatcgtagatacgaaatgtttcagaccaataaatatacatgcgttattcttacagttta |
1510164 |
T |
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| Q |
544 |
ttgttattgcaataagaaatgtttcaaaattcaaccgtgctgaaaataataaatatttgttatatatgtgctaa |
617 |
Q |
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| T |
1510163 |
ttgttattgcaataagaaatgtttcaaaattcaaccgtgctgaaaataataaatatttgttatatatgtgctaa |
1510090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 317 - 496
Target Start/End: Original strand, 3066625 - 3066801
Alignment:
| Q |
317 |
ataaactttaactccttgtgcaagcatcaagcatgtctctgattttgctcattcctgaatattcatgcggcaagtaacttgtggatgttcttctgcaaaa |
416 |
Q |
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||||| |||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||| || ||||||||||| ||||| | |||||||||| |
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| T |
3066625 |
ataaaatttaactccttgtggaagtatcaagcatggctctgattttgctcattcctgaatattcacgcagcaagtaacttctggatatccttctgcaaag |
3066724 |
T |
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| Q |
417 |
atgtgaaacgggaaaagatgagattaagcataaaatattttaggaagcttatatagtataccgatattaatcgtagatac |
496 |
Q |
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| T |
3066725 |
atgtgaaacggg-gtagatcagattaagcataaaatgttttaggaag--tccatagtatacggatattaatcgtggatac |
3066801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 98
Target Start/End: Original strand, 1077557 - 1077590
Alignment:
| Q |
65 |
tggatgaaagcaaactcttgttttgttttacttg |
98 |
Q |
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| T |
1077557 |
tggatgaaagcaaactcatgttttgttttacttg |
1077590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 98
Target Start/End: Complemental strand, 2847133 - 2847100
Alignment:
| Q |
65 |
tggatgaaagcaaactcttgttttgttttacttg |
98 |
Q |
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| T |
2847133 |
tggatgaaagcaaactcatgttttgttttacttg |
2847100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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