View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9063_low_7 (Length: 531)
Name: NF9063_low_7
Description: NF9063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9063_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 454; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Complemental strand, 2484134 - 2483625
Alignment:
| Q |
1 |
atacaatttatcaccaaattgcatcacaaccacaccaaacaaaccattctgagtggatcgcaatattttttcttattaccaaaccgcctctcaattaatc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2484134 |
atacaatttatcaccaaattgcatcacaaccacaccaaacaagcctttctgagtggatcgtaatattttttcttattaccaaaccgcctctcaattaatc |
2484035 |
T |
|
| Q |
101 |
caataacttcaaatgcaattgtggtagcaaattccaaattgtatactcaatcaaactctttttatttaaaacgacaactttctcaatccaaatgttgcaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2484034 |
caataacttcaaatgcaattgtggtagcaaattccaaattgtatactcaatcaaactctttttatttaaaacgacaactttctcaatccaaatgttgcaa |
2483935 |
T |
|
| Q |
201 |
gcggtgcctattttaagaagaaaccaaaattgcaaacacaagatatgccacttgctgcacatgaagaaactcaataatcaatttgtaatgcctctgaata |
300 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
2483934 |
gcggtgcctattttaagaagaaaccaaaattgcaatt-caagatatgccacttgctgcacatgaagaaactcaataatcaagttgtaatgcctctgaaga |
2483836 |
T |
|
| Q |
301 |
tttttaacaaactaagaaaaccaaaataacaaattaagaaaaccaaatcactatcaatataacgaatattcaaaagacaaacctaaaacaatcccaaact |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2483835 |
tttttaacaaactaagaaaaccaaaataacaaattaagaaaaccaaatcactatcaatataacgaatattcaaaagacaaaccaaaaacaatcccaaact |
2483736 |
T |
|
| Q |
401 |
tttggaattcgacggcagaagcgattagtggttcaagcggatcgaaccatgctcttcataccatgttaacaatacaaatacgtacagatataaaataaag |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
2483735 |
tttggaattcgacggcagaagcgattagtggttcaagcggatcgaaccatgctcttgataccatgttaacaatacaaa----tacagatataaaataaag |
2483640 |
T |
|
| Q |
501 |
aaaaatagaataaga |
515 |
Q |
| |
|
||||||||||||||| |
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| T |
2483639 |
aaaaatagaataaga |
2483625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 319 - 481
Target Start/End: Complemental strand, 2479359 - 2479191
Alignment:
| Q |
319 |
aaccaaaataacaaattaagaaaaccaaatcactatcaatata----acgaatattcaaaagacaaacctaaaacaatcccaaacttttggaattcgacg |
414 |
Q |
| |
|
|||||| ||||||||| |||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
2479359 |
aaccaacataacaaatcaagagaactaaatcactatcaatatatataacgaatattcaaaagacaaaccaaaaacaatcccaagcttttggaattcgacg |
2479260 |
T |
|
| Q |
415 |
gcagaagcgattagtggttc--aagcggatcgaaccatgctcttcataccatgttaacaatacaaatac |
481 |
Q |
| |
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| ||| ||||||||||||| ||| ||||| ||||||||||||||||| |||||||||| ||| |||| |
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|
| T |
2479259 |
gtggaaacgattagtggttcaaaagaggatcaaaccatgctcttcatacaatgttaacaacacatatac |
2479191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 392 - 461
Target Start/End: Original strand, 1175437 - 1175506
Alignment:
| Q |
392 |
tcccaaacttttggaattcgacggcagaagcgattagtggttcaagcggatcgaaccatgctcttcatac |
461 |
Q |
| |
|
|||||||||||||| ||||||| || ||||||| |||||||||||| |||| |||||| ||||| |||| |
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|
| T |
1175437 |
tcccaaacttttgggattcgacagcggaagcgactagtggttcaagacgatcaaaccatactcttgatac |
1175506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 17927413 - 17927621
Alignment:
| Q |
1 |
atacaatttatcaccaaattgcatcacaaccacaccaaacaaaccattctgagtggatcgcaatatttt-ttcttattaccaaaccgcctctcaattaat |
99 |
Q |
| |
|
||||||||||||| ||||| ||| |||||| ||||||| |||| | |||||||||| | |||||| ||||||||||| | | |||||| ||||||| |
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|
| T |
17927413 |
atacaatttatcataaaatttcataacaaccgcaccaaataaacaaaattgagtggatctccctatttttttcttattaccgatctgcctcttaattaat |
17927512 |
T |
|
| Q |
100 |
ccaataacttcaaatgcaattgtggtagcaaattccaaattgtatactcaatcaaactctttttatttaaaacgacaactttctcaatccaaatgttgca |
199 |
Q |
| |
|
|||||||||||||| ||| | ||||||||||||||||||||||||||| ||| ||||| |||| ||| |||||||| ||||||||||| ||||||||| |
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|
| T |
17927513 |
ccaataacttcaaacacaactatggtagcaaattccaaattgtatactcgatccaactcctttttttt--aacgacaattttctcaatcc-aatgttgca |
17927609 |
T |
|
| Q |
200 |
agcggtgcctat |
211 |
Q |
| |
|
|| |||| |||| |
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|
| T |
17927610 |
agtggtgtctat |
17927621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 446
Target Start/End: Original strand, 3775671 - 3775795
Alignment:
| Q |
323 |
aaaataacaaattaagaaaaccaaatcactatcaatataacgaatattcaaaagacaaacctaaaacaatcccaaacttttggaattcgacggcagaagc |
422 |
Q |
| |
|
|||||||||| || || |||||||||| || ||||||| ||| |||||||| |||| | || |||||||||||||||| ||| |||| ||||||| |
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|
| T |
3775671 |
aaaataacaagttgggagaaccaaatcatgattaatataatcaatcttcaaaaggcaaatcaaacacaatcccaaactttttgaaatcgataacagaagc |
3775770 |
T |
|
| Q |
423 |
gattagtggttcaa-gcggatcgaa |
446 |
Q |
| |
|
|| |||||||||| |||||||||| |
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|
| T |
3775771 |
gacaagtggttcaaggcggatcgaa |
3775795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 480
Target Start/End: Complemental strand, 24135127 - 24135082
Alignment:
| Q |
435 |
aagcggatcgaaccatgctcttcataccatgttaacaatacaaata |
480 |
Q |
| |
|
||||||||| ||||| |||||| ||||||| ||||||||||||||| |
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|
| T |
24135127 |
aagcggatcaaaccacgctcttgataccatcttaacaatacaaata |
24135082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 474
Target Start/End: Complemental strand, 3950697 - 3950617
Alignment:
| Q |
395 |
caaacttttggaattcgacggcagaagcgattagtggttcaag-cggatcgaaccatgctcttcataccatgttaacaata |
474 |
Q |
| |
|
|||||||||| |||||| ||||||| || ||||||||||| |||||| ||||||||| | ||||||||||||||||| |
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|
| T |
3950697 |
caaacttttgagattcgatagcagaagtgacaagtggttcaaggcggatcaaaccatgctttcgataccatgttaacaata |
3950617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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