View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9063_low_9 (Length: 464)
Name: NF9063_low_9
Description: NF9063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9063_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 202 - 451
Target Start/End: Complemental strand, 8926340 - 8926083
Alignment:
| Q |
202 |
tatatatgcatgtttagaatcagagtgaacttaacgaggtgacacgacacatcgtgattctgtcaagttcaccgttaatctaaacatgcac--------a |
293 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8926340 |
tatatatgcatgtttagaatcaaagtgaacttaacgaggtgacacgacacatcgtgattctgtcaagttcaccgttaatctaaacatgcactgtattaaa |
8926241 |
T |
|
| Q |
294 |
gagaaattttgatgatgtatagaactagcacctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttctctcttctgtgtt |
393 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8926240 |
gagaaattttgatgatgtatagaactagtacctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttctctcttctgtgtt |
8926141 |
T |
|
| Q |
394 |
aagcttccccatgtcaacaactggaaagttttccattttgcttcttttttaactttct |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8926140 |
aagcttccccatgtcaacaactggaaagttttccattttgcttcttttttaactttct |
8926083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 8926520 - 8926393
Alignment:
| Q |
18 |
acacactccaaacctttgcttgctaccatttctttgaacctttgttccatacacttcttgtagtgttcttttgtgagcttctccactttgtccatcaact |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8926520 |
acacactccaaacctttgcttgctaccatttctttgaacctttgttccatacacttcttgtagtgttcttttgtgagcttctccactttgtccatcaact |
8926421 |
T |
|
| Q |
118 |
caatagatatactatggttcacacactt |
145 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
8926420 |
caatagatatactatggttcacacactt |
8926393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 55523263 - 55523146
Alignment:
| Q |
22 |
actccaaacctttgcttgctaccatttctttgaacctttgttccatacacttcttgtagtgttcttttgtgagcttctccactttgtccatcaactcaat |
121 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||| |||||||| ||||||||||| ||||| || |
|
|
| T |
55523263 |
actctaaacctttgcttgctaccatttctttgaacctttgctccatacgcttcttgtagttttcttttgtcagcttctcaactttgtccatgaactctat |
55523164 |
T |
|
| Q |
122 |
agatatactatggttcac |
139 |
Q |
| |
|
||||| | ||||||||| |
|
|
| T |
55523163 |
ggatatcccatggttcac |
55523146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 431
Target Start/End: Complemental strand, 55522810 - 55522702
Alignment:
| Q |
323 |
acctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttctctcttctgtgttaagcttccccatgtcaacaactggaaagt |
422 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||| || ||||||||||| | | | ||||||| |||||||| ||| ||||||||| |||||||| | |
|
|
| T |
55522810 |
acctcaaagaaaccccaattttcacaagcatcttttatgatctccatggttgatgctttctcttcagtgttaagattcttcatgtcaactactggaaact |
55522711 |
T |
|
| Q |
423 |
tttccattt |
431 |
Q |
| |
|
| ||||||| |
|
|
| T |
55522710 |
tctccattt |
55522702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 384
Target Start/End: Complemental strand, 37628757 - 37628696
Alignment:
| Q |
323 |
acctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttctctc |
384 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
37628757 |
acctcaaagaatccccagttttcacaagcatccttgattttctccatagtagcttttctctc |
37628696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 381
Target Start/End: Original strand, 36872707 - 36872765
Alignment:
| Q |
323 |
acctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttct |
381 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| || || ||||||||||| ||||||| |
|
|
| T |
36872707 |
acctcaaagaatccccaattctcacaagcatccttaattttctccatggtatcttttct |
36872765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University