View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9064_high_5 (Length: 416)
Name: NF9064_high_5
Description: NF9064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9064_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 14)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 233
Target Start/End: Original strand, 22352314 - 22352536
Alignment:
| Q |
11 |
atggacatcagcaagacatagtttcttcaaattcataaactacccatcttgaaaatgtaaactttcgaaattgtcttcataacggtgaccaccaccagca |
110 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22352314 |
atggaaatcagcaagatatagtttcttcaaattcataaacaacccttcttgaaaatgtaaactttcgaaattgtcttcataacggtgaccaccaccagca |
22352413 |
T |
|
| Q |
111 |
aaagtgagggacaacaaatttggcatactttggagtaatttccttgcatcattctctggcttcggaagattcactttcagcttaacaagattctggagtt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22352414 |
aaagtgagggacaacaaatttggcatactttggagtaatttcattgcatcattctctggcttcggaagattcactttcagcttaacaagattctggagtt |
22352513 |
T |
|
| Q |
211 |
ttgaaatccactcaggcaacttc |
233 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
22352514 |
ttgaaatccactcaggcaacttc |
22352536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 116 - 395
Target Start/End: Original strand, 22356557 - 22356845
Alignment:
| Q |
116 |
gagggacaacaaatttggcatactttggagtaatttccttgcatcattctctggcttcggaagattcactttcagcttaacaagattctggagttttgaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| || | ||| ||| | || |||||||| |||||||| |||||||||||| |
|
|
| T |
22356557 |
gagggacaacaaatttggcatactttggagtaatttcattgcatcattcacttccctcgtaaggcttacattcagcttgacaagattttggagttttgaa |
22356656 |
T |
|
| Q |
216 |
atccactcaggcaacttctttaattt---cccttcaagtttaagacgttgaagcttaggtgggggtgaattcaaatcaagatcaatgaatgtgtcatatt |
312 |
Q |
| |
|
||||||||||||||||| |||||||| ||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
22356657 |
atccactcaggcaacttatttaatttaaggtcttgaagtttaacacgttgaagcataggtgggggtgaattcaaatcaagatcaatgaatgcgccatatc |
22356756 |
T |
|
| Q |
313 |
ccattccgat------tcctttaatacttagtttctccaatttttgcatctgattgattgaggaagatagagcactcatatatttactc |
395 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
22356757 |
ccattccgattccgactcctttaatacttagtttctccaatttttgcatctcattgattgaggaagatataccactcatatatttactc |
22356845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 29 - 403
Target Start/End: Original strand, 22628941 - 22629306
Alignment:
| Q |
29 |
tagtttcttcaaattcataaactacccatcttgaaaatgtaaactttcgaaattgtcttcataacggtgaccaccaccagcaaaagtgagggacaacaaa |
128 |
Q |
| |
|
||||| |||||||||||||||| | ||||||||||||||||| ||||| || |||||||||||| | || ||||| || | |||||||| ||| |
|
|
| T |
22628941 |
tagttccttcaaattcataaaccatccatcttgaaaatgtaacctttccaatttgtcttcataatcatcactaccactgacata---gagggacagcaat |
22629037 |
T |
|
| Q |
129 |
tttggcatactttggagtaatttccttgcatcattctctggcttcggaagattcactttcagcttaacaagattctggagttttgaaatccactcaggca |
228 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||| || |||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
22629038 |
tttcgcatactttggagtaatttcattgcatcattcccttgcttcgtaagcatcactctcagcttaacaagattctggagttttgaaatccactcaggta |
22629137 |
T |
|
| Q |
229 |
acttctttaatttcccttcaagtttaagacgttgaagcttaggtgggggtgaattcaaatcaagatcaatgaatgtgtcatattccattccgattccttt |
328 |
Q |
| |
|
| ||||| || | || | ||||||| |||||||||| ||||||||||||| ||| |||| |||||||||||||||||||||| || ||| | |
|
|
| T |
22629138 |
atttcttaaaatatccatagagtttaacacgttgaagcctaggtgggggtgacttctaatccagatcaatgaatgtgtcatatt------ggactccact |
22629231 |
T |
|
| Q |
329 |
aatacttagtttctccaatttttgcatctgattgattgaggaagatagagcactcatatatttactcctaacacc |
403 |
Q |
| |
|
||| |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22629232 |
aatttgtagtttctccaattgttgcatcttattgattgaggaagatatagcactcatatatttactcctaacacc |
22629306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 117 - 403
Target Start/End: Original strand, 22634041 - 22634321
Alignment:
| Q |
117 |
agggacaacaaatttggcatactttggagtaatttccttgcatcattctctggcttcggaagattcactttcagcttaacaagattctggagttttgaaa |
216 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||| ||||||||||| || ||||| || |||| |||| |||||| |||| ||||||||||||| |
|
|
| T |
22634041 |
agggacaacaagtttggcatacttttgagtaatttcattgcatcattcccttccttcgtaatcgtcaccttcaacttaacgagatattggagttttgaaa |
22634140 |
T |
|
| Q |
217 |
tccactcaggcaacttctttaatttcccttcaagtttaagacgttgaagcttaggtgggggtgaattcaaatcaagatcaatgaatgtgtcatattccat |
316 |
Q |
| |
|
||||||||||||| ||| ||| | |||| |||||||| |||||||||||| |||||||||||||||||||| | |||||||||||||| ||| |
|
|
| T |
22634141 |
tccactcaggcaatttcaataaataccctataagtttaacacgttgaagctttggtgggggtgaattcaaatccatatcaatgaatgtgttata------ |
22634234 |
T |
|
| Q |
317 |
tccgattcctttaatacttagtttctccaatttttgcatctgattgattgaggaagatagagcactcatatatttactcctaacacc |
403 |
Q |
| |
|
|| ||||||| ||||| ||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22634235 |
tctgattcctctaatatttagtttctccaattgttgcatcttgttgattgaggaagatatagcactcatatatttactcctaacacc |
22634321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 23 - 403
Target Start/End: Original strand, 22466446 - 22466811
Alignment:
| Q |
23 |
aagacatagtttcttcaaattcataaactacccatcttgaaaatgtaaactttcgaaattgtcttcataacggtgaccaccaccagcaaaagtgagggac |
122 |
Q |
| |
|
|||| |||||| |||||||||| ||||| ||||||| |||||||||| |||||| || |||||||||||| || ||||| | |||| ||| |||| | |
|
|
| T |
22466446 |
aagatatagttccttcaaattcttaaaccacccatcctgaaaatgtatactttcaaatttgtcttcataatggcgaccatcgccagtgaaacagaggagc |
22466545 |
T |
|
| Q |
123 |
aacaaatttggcatactttggagtaatttccttgcatcattctctggcttcggaagattcactttcagcttaacaagattctggagttttgaaatccact |
222 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||| || |||| || |||| || |||| ||||||||| | ||||||||||||||||| |
|
|
| T |
22466546 |
aacaagtttggcatactttggagtaatttcattgcatcattcccttccttcctaactgtcaccttgagctcaacaagatttttgagttttgaaatccact |
22466645 |
T |
|
| Q |
223 |
caggcaacttctttaatttcccttcaagtttaagacgttgaagcttaggtgggggtgaattcaaatcaagatcaatgaatgtgtcatattccattccgat |
322 |
Q |
| |
|
|||| ||||| |||| | || |||||||||| |||||||||| |||||||||||||||||||||| ||| ||||||||| | ||||| |||| |
|
|
| T |
22466646 |
caggtaactttcttaaatgccagtcaagtttaacacgttgaagcctaggtgggggtgaattcaaatccagaccaatgaatg----agattcc--tccg-- |
22466737 |
T |
|
| Q |
323 |
tcctttaatacttagtttctccaatttttgcatctgattgattgaggaagatagagcactcatatatttactcctaacacc |
403 |
Q |
| |
|
||| ||||||||||| || |||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22466738 |
-------ataagtagtttctccatttgttgcatttgattgattgaggaagatatagcactcatatatttactcctaacacc |
22466811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 29 - 403
Target Start/End: Original strand, 22441237 - 22441608
Alignment:
| Q |
29 |
tagtttcttcaaattcataaactacccatcttgaaaatgtaaactttcgaaattgtcttcataacggtgaccaccaccagcaaaagtgagggacaacaaa |
128 |
Q |
| |
|
||||| |||||||||| ||||| | ||| ||||||||||||| |||||||| |||||||||||| | | |||| | | | | |||||||||||| |
|
|
| T |
22441237 |
tagttccttcaaattcgtaaaccatccaacttgaaaatgtaacctttcgaatttgtcttcataataatcagaaccatccgagatatggagggacaacaag |
22441336 |
T |
|
| Q |
129 |
tttggcatactttggagtaatttccttgcatcattctctggcttcggaagattcactttcagcttaacaagattctggagttttgaaatccactcaggca |
228 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||| | | |||||| ||| ||||| | ||||||||||| || ||||||| |||||||||||| | |
|
|
| T |
22441337 |
tttggcatacttatgagtaatttcattgcatcattttgttgcttcgtaagtgtcactctaagcttaacaaggtttctgagtttttgaatccactcaggaa |
22441436 |
T |
|
| Q |
229 |
acttctttaatttcccttcaagtttaagacgttgaagcttaggtgggggtgaattcaaatcaagatcaatgaatgtgtcatattccattccgattccttt |
328 |
Q |
| |
|
|||| | ||| ||||| || | ||||| | ||||||||||||||||||||||||||||||| |||||||||||||||| || | ||| || ||| | |
|
|
| T |
22441437 |
acttatataaattcccgtcgaatttaacatgttgaagcttaggtgggggtgaattcaaatccagatcaatgaatgtgt--tagtagatt-ggactccact |
22441533 |
T |
|
| Q |
329 |
aatacttagtttctccaatttttgcatctgattgattgaggaagatagagcactcatatatttactcctaacacc |
403 |
Q |
| |
|
|||| ||||||||||||||| |||||||| ||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
22441534 |
aataattagtttctccaattgttgcatctcgttgattgagaaagatatagcactcatatatttactcctaacacc |
22441608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 116 - 403
Target Start/End: Original strand, 22366503 - 22366787
Alignment:
| Q |
116 |
gagggacaacaaatttggcatactttggagtaatttccttgcatcattctctggct---tcggaagattcactttcagcttaacaagattctggagtttt |
212 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||||| ||| || || ||| ||| |||| |||| | |||||| || ||||||| |
|
|
| T |
22366503 |
gagggacaacaagtttggcatactttggagtaatttcattgcatcgttcccttcctccttcgtaagtctcaccttcatgtcaacaaggtttgtgagtttt |
22366602 |
T |
|
| Q |
213 |
gaaatccactcaggcaacttctttaatttcccttcaagtttaagacgttgaagcttaggtgggggtgaattcaaatcaagatcaatgaatgtgtcatatt |
312 |
Q |
| |
|
| |||||||||||| ||||||||||| ||||| | ||| || | |||||||| |||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
22366603 |
ggaatccactcaggaaacttctttaaattcccgtagagtccaatatgttgaagcataggtgggggtgaattcaaatccagatcaatgaatgtctcatatt |
22366702 |
T |
|
| Q |
313 |
ccattccgattcctttaatacttagtttctccaatttttgcatctgattgattgaggaagatagagcactcatatatttactcctaacacc |
403 |
Q |
| |
|
||| ||| ||||| |||||||||||| || |||||||| ||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22366703 |
------cgactccactaatatttagtttctccagttgttgcatcttattgattgaagaagatatagcactcatatatttactcctaacacc |
22366787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 262 - 403
Target Start/End: Original strand, 22352538 - 22352673
Alignment:
| Q |
262 |
gaagcttaggtgggggtgaattcaaatcaagatcaatgaatgtgtcatattccattccgattcctttaatacttagtttctccaatttttgcatctgatt |
361 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| | || ||| ||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
22352538 |
gaagcttaggtgggggtgaattcaaatccagatcaatgaatgtgtaagg---ca---cgactccaataatatatagtttctccaatttttgcatctgatt |
22352631 |
T |
|
| Q |
362 |
gattgaggaagatagagcactcatatatttactcctaacacc |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22352632 |
gattgaggaagatagagcactcatatatttactcctaacacc |
22352673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 23 - 301
Target Start/End: Original strand, 22435123 - 22435398
Alignment:
| Q |
23 |
aagacatagtttcttcaaattcataaactacccatcttgaaaatgtaaactttcgaaattgtcttcataacggtgaccaccaccagcaaaagtgagggac |
122 |
Q |
| |
|
|||| |||||| |||||||||||||||| | ||||||| ||||||||| ||||| || |||||||||||| | | | |||||| | | ||||||| |
|
|
| T |
22435123 |
aagatatagttccttcaaattcataaaccatccatcttcaaaatgtaacctttccaatttgtcttcataa---tcaggaacaccagagatatggagggac |
22435219 |
T |
|
| Q |
123 |
aacaaatttggcatactttggagtaatttccttgcatcattctctggcttcggaagattcactttcagcttaacaagattctggagttttgaaatccact |
222 |
Q |
| |
|
||||| |||||||||||||| ||||||||| ||||||||||| || |||| | | || | ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22435220 |
aacaagtttggcatactttgaagtaatttcattgcatcattcacttccttcaaacgtggcaaatccagcttaacaagattttggagttttgaaatccact |
22435319 |
T |
|
| Q |
223 |
caggcaacttctttaatttcccttcaagtttaagacgttgaagcttaggtgggggtgaattcaaatcaagatcaatgaa |
301 |
Q |
| |
|
|||| ||||| ||| | | || ||||||| ||||| |||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
22435320 |
caggaaacttatttgaatatccaaagagtttaacacgttcaagcctaggtgggggtgaattcaaatccagatcaatgaa |
22435398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 328 - 403
Target Start/End: Original strand, 22430001 - 22430076
Alignment:
| Q |
328 |
taatacttagtttctccaatttttgcatctgattgattgaggaagatagagcactcatatatttactcctaacacc |
403 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||| |||||| |
|
|
| T |
22430001 |
taatatttagtttctccaattcgtgcatctgattgattgaggaacataaagcactcatatatttactccaaacacc |
22430076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 185 - 403
Target Start/End: Original strand, 22457161 - 22457373
Alignment:
| Q |
185 |
tttcagcttaacaagattctggagttttgaaatccactcaggcaacttctttaatttcccttcaagtttaagacgttgaagcttaggtgggggtgaattc |
284 |
Q |
| |
|
|||||||||||||||||| || ||||||| ||||||| ||||||| ||| ||| ||||| ||||| ||||| || ||||| ||||||| ||||||||| |
|
|
| T |
22457161 |
tttcagcttaacaagattttgaagttttggaatccacagaggcaacatctctaacttcccatcaagagtaagatgtcgaagcataggtggtggtgaattc |
22457260 |
T |
|
| Q |
285 |
aaatcaagatcaatgaatgtgtcatattccattccgattcctttaatacttagtttctccaatttttgcatctgattgattgaggaagatagagcactca |
384 |
Q |
| |
|
|||| | ||||| | ||||||||| |||| || | ||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
22457261 |
aaatgcatgtcaataactgtgtcata------tccgtttgcgcgaatttgtagtttctccactttttgcatctcattgattgaggaagatatagcactca |
22457354 |
T |
|
| Q |
385 |
tatatttactcctaacacc |
403 |
Q |
| |
|
| ||| ||||||||||| |
|
|
| T |
22457355 |
tgtatccgctcctaacacc |
22457373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 185 - 403
Target Start/End: Original strand, 22480142 - 22480354
Alignment:
| Q |
185 |
tttcagcttaacaagattctggagttttgaaatccactcaggcaacttctttaatttcccttcaagtttaagacgttgaagcttaggtgggggtgaattc |
284 |
Q |
| |
|
|||||||||||||||||| || ||||||| ||||||| ||||||| ||| ||| ||||| ||||| ||||| || ||||| ||||||| ||||||||| |
|
|
| T |
22480142 |
tttcagcttaacaagattttgaagttttggaatccacagaggcaacatctctaacttcccatcaagagtaagatgtcgaagcataggtggtggtgaattc |
22480241 |
T |
|
| Q |
285 |
aaatcaagatcaatgaatgtgtcatattccattccgattcctttaatacttagtttctccaatttttgcatctgattgattgaggaagatagagcactca |
384 |
Q |
| |
|
|||| | ||||| | ||||||||| |||| || | ||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
22480242 |
aaatgcatgtcaataactgtgtcata------tccgtttgcgcgaatttgtagtttctccactttttgcatctcattgattgaggaagatatagcactca |
22480335 |
T |
|
| Q |
385 |
tatatttactcctaacacc |
403 |
Q |
| |
|
| ||| ||||||||||| |
|
|
| T |
22480336 |
tgtatccgctcctaacacc |
22480354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 393
Target Start/End: Original strand, 22435442 - 22435484
Alignment:
| Q |
351 |
tgcatctgattgattgaggaagatagagcactcatatatttac |
393 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22435442 |
tgcatcttattgattgaggaagatatagcactcatatatttac |
22435484 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 22356470 - 22356526
Alignment:
| Q |
20 |
agcaagacatagtttcttcaaattcataaactacccatcttgaaaatgtaaactttc |
76 |
Q |
| |
|
||||||| |||||| |||||| ||| ||||| | |||||||| |||||||||||||| |
|
|
| T |
22356470 |
agcaagatatagttccttcaagttcttaaaccatccatcttggaaatgtaaactttc |
22356526 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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