View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9064_low_15 (Length: 409)
Name: NF9064_low_15
Description: NF9064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9064_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 54 - 390
Target Start/End: Original strand, 54591999 - 54592335
Alignment:
| Q |
54 |
ttcaatcacttttattttcttaaattactaacaatgtttacatgttggcgtccgtgccatgtatgtgtaaaatgtaaatgcttcataggttactaatgct |
153 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54591999 |
ttcaatcacttttattttctcaaattactaacaatgtttacatgtcggcgtccgtgccatgtatgtgtaaaatgtaaatgcttcataggttactaatgct |
54592098 |
T |
|
| Q |
154 |
tgtttaaaaggaatttcacaatttcacttcaactagacaaaacaagtatctgaaattggggtggtcataatcagccaccactggtgctatacgttgaact |
253 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54592099 |
tgtttaaaaggaattttacaatttcacttcaactagacaaaacaagtatctgaaattggggtggtcataatcagccaccactggtgctatacgttgaact |
54592198 |
T |
|
| Q |
254 |
agtaaaaagtgcagactatgttattttattcagttctcagatttttggaattggtttttcggatcttttctcccaattactacattccaaaaggatctag |
353 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54592199 |
agtaaaaagtgcagactatgttattttattcagttctcagatttttggaattggtttttcggatcttttctcccaattactacattccaaaaggatctag |
54592298 |
T |
|
| Q |
354 |
ctggctatctgaaacatgtgaataaatataccaaatt |
390 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |
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| T |
54592299 |
ctggctatctgaaacatgtgaatacatataccaaatt |
54592335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 80
Target Start/End: Complemental strand, 17105302 - 17105273
Alignment:
| Q |
51 |
acattcaatcacttttattttcttaaatta |
80 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
17105302 |
acattcaatcacttttattttcttaaatta |
17105273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 10338649 - 10338605
Alignment:
| Q |
51 |
acattcaatcacttttattttcttaaattactaacaatgtttaca |
95 |
Q |
| |
|
|||||||||||||| ||||||||||||||| || ||||||||||| |
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|
| T |
10338649 |
acattcaatcacttctattttcttaaattattatcaatgtttaca |
10338605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 1960348 - 1960385
Alignment:
| Q |
51 |
acattcaatcacttttattttcttaaattactaacaat |
88 |
Q |
| |
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||||||||||||||| ||||||||||||||||| |||| |
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|
| T |
1960348 |
acattcaatcactttcattttcttaaattactaccaat |
1960385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 3943811 - 3943761
Alignment:
| Q |
30 |
acacaatacaaacataccgtgacattcaatcacttttattttcttaaatta |
80 |
Q |
| |
|
||||||||| ||||| || |||||||||||||||||||||||||||||| |
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|
| T |
3943811 |
acacaatactaacatgtggttacattcaatcacttttattttcttaaatta |
3943761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 80
Target Start/End: Complemental strand, 10440413 - 10440384
Alignment:
| Q |
51 |
acattcaatcacttttattttcttaaatta |
80 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
10440413 |
acattcaatcacttttattttcttaaatta |
10440384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 79
Target Start/End: Original strand, 8431282 - 8431310
Alignment:
| Q |
51 |
acattcaatcacttttattttcttaaatt |
79 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
8431282 |
acattcaatcacttttattttcttaaatt |
8431310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 80
Target Start/End: Complemental strand, 12170632 - 12170604
Alignment:
| Q |
52 |
cattcaatcacttttattttcttaaatta |
80 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
12170632 |
cattcaatcacttttattttcttaaatta |
12170604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 80
Target Start/End: Complemental strand, 12415060 - 12415032
Alignment:
| Q |
52 |
cattcaatcacttttattttcttaaatta |
80 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
12415060 |
cattcaatcacttttattttcttaaatta |
12415032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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