View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9064_low_23 (Length: 232)
Name: NF9064_low_23
Description: NF9064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9064_low_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 35522121 - 35522327
Alignment:
| Q |
9 |
aagcagagagacatagcttgtattcttcaaatttgatttatatagtatataagttctatatgtttatgnnnnnnnnat-ccaaacatgacagtgcagtgg |
107 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
35522121 |
aagcagcgaggcatagcttgtattcttcaaatttgatttatatagtatataagttctatatgtttatgtttttttttttccaaacatgacagtgcagtgg |
35522220 |
T |
|
| Q |
108 |
aagtgatcttgatgaggaaggtttgaatcctcgtgataaaaagccagaccagcaaagcgcaccacagtacaaacgtttgattacaatccatgctggtaag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35522221 |
aagtgatcttgatgaggaaggtttgaatcctcgtgataaaaagccagaccagcaaagcgcaccacagtacaaacgtttgattacaatccatgctggtaag |
35522320 |
T |
|
| Q |
208 |
cccaagg |
214 |
Q |
| |
|
||||||| |
|
|
| T |
35522321 |
cccaagg |
35522327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University