View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9064_low_24 (Length: 201)
Name: NF9064_low_24
Description: NF9064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9064_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 26969314 - 26969488
Alignment:
| Q |
14 |
atcttattcagggtggcatctttcccttctttcgccttctcagccgtataatccttatactcacccatcttattcatggtagcatcttttccttcctttg |
113 |
Q |
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| T |
26969314 |
atcttattcatggtggcatctttcccttctttcgccttctcagccgtataatccttatactcacccatcttattcatggtagcatcttttccttcctttg |
26969413 |
T |
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| Q |
114 |
ccttttccgcagcatagtctttgtactccccagctttgtccttggcttcccttgctttctctccggcataacctg |
188 |
Q |
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| T |
26969414 |
ccttttccgcagcatagtctttgtactccccagctttgtccttggcttcccttgctttctctccggcataacctg |
26969488 |
T |
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Target: chr1; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 26969269 - 26969351
Alignment:
| Q |
35 |
ttcccttctttcgccttctcagccgtataatccttatactcacccatcttattcatggtagcatcttttccttcctttgcctt |
117 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||| |
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| T |
26969269 |
ttcccttccttcgccttctcagctgtataatccttatactcacccatcttattcatggtggcatctttcccttctttcgcctt |
26969351 |
T |
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