View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9064_low_3 (Length: 722)
Name: NF9064_low_3
Description: NF9064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9064_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 7221772 - 7222110
Alignment:
| Q |
18 |
agttggtagtatcattataattgtgtgtgttctaccnnnnnnnttatatttgtttgtgcgaaactgattatgctcattcattctttgattttcttgctaa |
117 |
Q |
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| T |
7221772 |
agttagtagtatgattataattgtgtgtgttctaacaaaaaaattataattgtttgtgcgaaactgattatgctcattcattctttgattttctagctaa |
7221871 |
T |
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| Q |
118 |
tatgtaacatggcttttgcttctggtaggtt-ctgttaacgcaataaaaaatgtggtgtaagaattctgaaataaacaggcttgtgccaagtctattgta |
216 |
Q |
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| T |
7221872 |
tatgtaacatggcttttgcttctggtaggtttctggtaacgcaataaaaaatgtggtgtaagaattctgaaataaacaggcttgtgccaagtctattgta |
7221971 |
T |
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| Q |
217 |
catgtgagttagactttcatatattgacaaattactctcatcatttttgctttatcatcttactgctatctatgttgaattgttattagtttgtgtttct |
316 |
Q |
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| T |
7221972 |
catgtgagttagactttcatatattgacaaattactctcatcatttttgctttatcatcttgctgctatctatgttgagttgttattagtttgtgtttct |
7222071 |
T |
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| Q |
317 |
tcttccatcttttgatcggttatgcttcatttgtgcttt |
355 |
Q |
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| T |
7222072 |
tcttccatcttttgatcggttatgcatcatttgtgcttt |
7222110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 422 - 707
Target Start/End: Original strand, 7222115 - 7222403
Alignment:
| Q |
422 |
tgtgtgatgcgcttgtgcacacttacttttcctgtataattagttgtaagctcacaattcaatctatgagaatcacacttttccttattcaatcttctcc |
521 |
Q |
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| T |
7222115 |
tgtgtgatgcgcttgtgcacacttacttttcctatataattagttgtaagctcacaattcaatctatgagaatcccacttttccttattcaatcttctcc |
7222214 |
T |
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| Q |
522 |
ttcttcttattctcatatgtggtttttcatcttaacatggtatcattcgttgtgtagcga---tccgcagtttgccttcgttcatcgcaatgccacctag |
618 |
Q |
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| T |
7222215 |
ttcttcttattctcatatgtgctttttcatcttaacatggtatcattcgttgtgtagcgatcctccgcagtttgccttcgttcatcgcaatgccacctag |
7222314 |
T |
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| Q |
619 |
attggctcatgttcctacggttgacccttctctgcatcaaacccctcccttcttcgttcatccgagcgatggtccttcttccgtctctg |
707 |
Q |
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| T |
7222315 |
attggctcatgttcctacggttgacccttctctgcatcaaaccacacccttcttcgttcatccgagcgatggtccttcttccgtctctg |
7222403 |
T |
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