View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9064_low_4 (Length: 664)

Name: NF9064_low_4
Description: NF9064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9064_low_4
NF9064_low_4
[»] chr8 (6 HSPs)
chr8 (19-303)||(12587528-12587811)
chr8 (256-303)||(27324864-27324911)
chr8 (19-68)||(27324642-27324691)
chr8 (256-303)||(26647250-26647297)
chr8 (257-299)||(34054155-34054197)
chr8 (257-294)||(29283695-29283732)
[»] chr6 (1 HSPs)
chr6 (19-303)||(6900343-6900628)
[»] chr7 (3 HSPs)
chr7 (19-302)||(22969821-22970102)
chr7 (112-303)||(22962526-22962718)
chr7 (255-306)||(21312015-21312066)
[»] chr1 (7 HSPs)
chr1 (19-302)||(21880523-21880804)
chr1 (304-527)||(24365101-24365324)
chr1 (362-567)||(24415555-24415758)
chr1 (481-599)||(24364976-24365098)
chr1 (575-646)||(25337972-25338043)
chr1 (328-575)||(24309888-24310135)
chr1 (492-567)||(24322181-24322256)
[»] chr3 (2 HSPs)
chr3 (19-299)||(49603075-49603360)
chr3 (259-305)||(36840782-36840828)
[»] chr4 (2 HSPs)
chr4 (259-303)||(41451213-41451257)
chr4 (256-302)||(53232830-53232876)
[»] chr5 (2 HSPs)
chr5 (256-303)||(3293738-3293785)
chr5 (256-303)||(10711679-10711726)
[»] scaffold0197 (1 HSPs)
scaffold0197 (255-299)||(26288-26332)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 303
Target Start/End: Original strand, 12587528 - 12587811
Alignment:
19 cagagagggagtttgtttgttcactatgagaaagaaagaaagaaaccgtgattgtaaattgtggatggtgggacctgtgttgtgttggtataaatcataa 118  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||    
12587528 cagagagggagtttgtttgttcactgtgagaaagaaagaaagaaaccgtgattgtaaattgtggatggcgggacctgtgttgtgttggtgtaaatcagaa 12587627  T
119 ttgtgttggctgggccttgggattgggcagttgggctactgggtgggattgtttgatattttagaaattgctagcagtagtgggtggggtgttattagca 218  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
12587628 ttgtgttagctgggccttgggattgggcagttgggctactgggtgggattgtttgatattttagaaattgctagcagtagtgggtggggtgttattagca 12587727  T
219 gtatatgtatatgtatatatnnnnnnnnntagagaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg 303  Q
    ||||||||||||||||| |          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
12587728 gtatatgtatatgtata-aaaaaaaaaaatagagaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg 12587811  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 256 - 303
Target Start/End: Original strand, 27324864 - 27324911
Alignment:
256 tttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg 303  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||    
27324864 tttgtgcatgtaggagcccccacaatcatgtgagtggctccgcccctg 27324911  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 27324642 - 27324691
Alignment:
19 cagagagggagtttgtttgttcactatgagaaagaaagaaagaaaccgtg 68  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| ||||    
27324642 cagagagggagtttgtttgttcaccgtgagaaagaaagaaagaaaacgtg 27324691  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 303
Target Start/End: Complemental strand, 26647297 - 26647250
Alignment:
256 tttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg 303  Q
    ||||||||||||||||||| ||||| | |||| |||||||||||||||    
26647297 tttgtgcaggcaggagcccacacaaccttgtgtgtggctccgcccctg 26647250  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 257 - 299
Target Start/End: Complemental strand, 34054197 - 34054155
Alignment:
257 ttgtgcaggcaggagcccccacaatcatgtgagtggctccgcc 299  Q
    ||||||||| ||||||||||||| || ||||||||||||||||    
34054197 ttgtgcaggtaggagcccccacactcttgtgagtggctccgcc 34054155  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 29283695 - 29283732
Alignment:
257 ttgtgcaggcaggagcccccacaatcatgtgagtggct 294  Q
    ||||||||||||||||||||||| || |||||||||||    
29283695 ttgtgcaggcaggagcccccacactcttgtgagtggct 29283732  T

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Target: chr6 (Bit Score: 183; Significance: 1e-98; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 6900628 - 6900343
Alignment:
19 cagagagggagtttgtttgttcactatgagaaagaaagaaagaaaccgtgattgtaaattgtggatggtgggacctgtgttgtgttggtataaatcataa 118  Q
    ||||||||| ||||||||||||||| | ||||||||||||||||| ||||||||| |||||||||||| ||||| |||||||||||||| | ||||| ||    
6900628 cagagagggtgtttgtttgttcactgtaagaaagaaagaaagaaagcgtgattgtgaattgtggatggcgggacgtgtgttgtgttggtgtgaatcagaa 6900529  T
119 ttgtgttggctgggccttgggattgggcagttgggctactgggtgggattgtttgatattttagaaattgctagcagtagtgggtggggtgttattagca 218  Q
    |||||||  |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
6900528 ttgtgttaactgggccttgggattgggcagttgggctactgagtgggagtgtttgatattttagaaattgctagcaatagtgggtggggtgttattagca 6900429  T
219 gtatatgtatatgtatat-atnnnnnnnnntagagaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg 303  Q
    |||||||||||||||||| |          |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
6900428 gtatatgtatatgtatataaaaaaaaaaattagaaaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg 6900343  T

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Target: chr7 (Bit Score: 172; Significance: 4e-92; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 19 - 302
Target Start/End: Complemental strand, 22970102 - 22969821
Alignment:
19 cagagagggagtttgtttgttcactatgagaaagaaagaaagaaa----ccgtgattgtaaattgtggatggtgggacctgtgttgtgttggtataaatc 114  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    ||||||||||||||||||||||| ||||| |||||||||||| | ||||||    
22970102 cagagagggagtttgtttgttcactgtgagaaagaaagaaagaaagaaaccgtgattgtaaattgtggatggcgggacgtgtgttgtgttgatgtaaatc 22970003  T
115 ataattgtgttggctgggccttgggattgggcagttgggctactgggtgggattgtttgatattttagaaattgctagcagtagtgggtggggtgttatt 214  Q
    | ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
22970002 agaattgtgttagctgggccttgggattgggcagttgggctactgggtgggagtgtttgatattttagaaattgctagcagtagtgggtggggtgttatt 22969903  T
215 agcagtatatgtatatgtatatatnnnnnnnnntagagaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccct 302  Q
    |||||||||||| |||  | | |          |||| ||||||||||||||||||||||||  ||||||||||||||||||||||||    
22969902 agcagtatatgtttataaaaaaa------aatttagaaaagtttgtgcaggcaggagcccccttaatcatgtgagtggctccgcccct 22969821  T

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Target: chr7; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 112 - 303
Target Start/End: Complemental strand, 22962718 - 22962526
Alignment:
112 atcataattgtgttggctgggccttgggattgggcagttgggctactgggtgggattgtttgatattttagaaattgct--agcagtagtgggtggggtg 209  Q
    |||| ||||||||| ||||||| |||||||||||||||||||||| |||||| || |||||||||||||||||||| ||  |||| ||||||||||||||    
22962718 atcagaattgtgttagctgggctttgggattgggcagttgggctattgggtgagagtgtttgatattttagaaattactaaagcaatagtgggtggggtg 22962619  T
210 ttattagcagtatatgtatatgtatat-atnnnnnnnnntagagaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg 303  Q
    ||||||||||||||  ||||||||||| |          |||| || |||||||||||||||||||||||||||||||||||||||| |||||||    
22962618 ttattagcagtata--tatatgtatataaaaaaaaaaattagaaaaatttgtgcaggcaggagcccccacaatcatgtgagtggctctgcccctg 22962526  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 21312015 - 21312066
Alignment:
255 gtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctgatt 306  Q
    |||||||||||||||||||| ||||| | |||| ||||||||||| ||||||    
21312015 gtttgtgcaggcaggagcccacacaaccttgtgtgtggctccgccactgatt 21312066  T

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Target: chr1 (Bit Score: 172; Significance: 4e-92; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 21880523 - 21880804
Alignment:
19 cagagagggagtttgtttgttcactatgagaa----agaaagaaagaaaccgtgattgtaaattgtggatggtgggacctgtgttgtgttggtataaatc 114  Q
    ||||||||||||||||||||||||| ||||||    |||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | ||||||    
21880523 cagagagggagtttgtttgttcactgtgagaaagaaagaaagaaagaaaccgtgattgtaaattgtggatggcgggacgtgtgttgtgttgatgtaaatc 21880622  T
115 ataattgtgttggctgggccttgggattgggcagttgggctactgggtgggattgtttgatattttagaaattgctagcagtagtgggtggggtgttatt 214  Q
    | ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
21880623 agaattgtgttagctgggccttgggattgggcagttgggctactgggtgggagtgtttgatattttagaaattgctagcagtagtgggtggggtgttatt 21880722  T
215 agcagtatatgtatatgtatatatnnnnnnnnntagagaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccct 302  Q
    |||||||||||| |||  | | |          |||| ||||||||||||||||||||||||  ||||||||||||||||||||||||    
21880723 agcagtatatgtttataaaaaaa------aatttagaaaagtttgtgcaggcaggagcccccttaatcatgtgagtggctccgcccct 21880804  T

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Target: chr1; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 304 - 527
Target Start/End: Complemental strand, 24365324 - 24365101
Alignment:
304 atttgaaatgtgaaaaattacaataaggtatttgtctataaactccggtgcacggattccataggtaaaagtttggataagtgtacaaaaatatgaacca 403  Q
    ||||||||||||||| |||| ||||| ||||||| |||| ||||||  || | ||||||||||| |||||||||||||||| |||||||||||||||||     
24365324 atttgaaatgtgaaagattagaataaagtatttgcctatgaactccattggatggattccatagctaaaagtttggataagagtacaaaaatatgaaccc 24365225  T
404 tctgcatgaacctataattttaagatcaaagtcaagtttgtgatgcagaaaattggggttcagtgaagcaagagcataatgatcggtaaacaatgaatcc 503  Q
    ||| |||||||||||||||||||||||||| |||||||||| | |  ||||||||||||| || ||||||| |||| ||||||| |||||||||||||||    
24365224 tctacatgaacctataattttaagatcaaaatcaagtttgtcaagtggaaaattggggttaagagaagcaaaagcagaatgatctgtaaacaatgaatcc 24365125  T
504 aaagctatggatcaaagttcagaa 527  Q
    ||| ||||||||| ||||| ||||    
24365124 aaaactatggatcgaagtttagaa 24365101  T

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Target: chr1; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 362 - 567
Target Start/End: Complemental strand, 24415758 - 24415555
Alignment:
362 ccataggtaaaagtttggataagtgtacaaaaatatgaaccatctgcatgaacctataattttaagatcaaagtcaagtttgtgatgcagaaaattgggg 461  Q
    ||||||||||| ||||| ||||| ||| ||||||||||||| ||| ||||||||||||||||| | |   || ||||||||||||   | |||||| |||    
24415758 ccataggtaaatgtttgtataagagtaaaaaaatatgaaccctctacatgaacctataattttgataggtaaatcaagtttgtga---acaaaattaggg 24415662  T
462 ttcagtgaagcaagagcataatgatcggtaaa-caatgaatccaaagctatggatcaaagttcagaagtttctgttaagaacagaattcgacgagtgtgg 560  Q
    || ||| ||| | ||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||     
24415661 ttaagtaaagtaggagcagaatgatcggtaaaacaatgaatccaaagctatggatcgaagttcagaagtctctgttacgaacagaattcgacgagtgtgt 24415562  T
561 gttgcag 567  Q
    |||||||    
24415561 gttgcag 24415555  T

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Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 481 - 599
Target Start/End: Complemental strand, 24365098 - 24364976
Alignment:
481 aatgatcggtaaacaatgaatccaaagctatggatcaaagttcagaagtttctgttaagaacagaattcgacgagtgtgggt------tgcagaggtaag 574  Q
    |||||| ||||||||||||||| |||| |||||||| || |||| |||||||  || |||||||||||||| ||||||||||      ||||||||||||    
24365098 aatgattggtaaacaatgaatctaaagttatggatcgaacttcataagtttc--ttgagaacagaattcgatgagtgtgggttgcagatgcagaggtaag 24365001  T
575 taatagtcttattctttagtatttt 599  Q
    |||||||||||||||||||||||||    
24365000 taatagtcttattctttagtatttt 24364976  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 575 - 646
Target Start/End: Complemental strand, 25338043 - 25337972
Alignment:
575 taatagtcttattctttagtattttaagcctccttcacatgtgagttggggttcaaatcctcaaggctccca 646  Q
    ||||||||||||| ||| |||||||||||| ||||||| |||||||||||||||||||| ||||||||||||    
25338043 taatagtcttattgttttgtattttaagcccccttcacgtgtgagttggggttcaaatcttcaaggctccca 25337972  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 328 - 575
Target Start/End: Complemental strand, 24310135 - 24309888
Alignment:
328 aaggtatttgtctataaactccggtgcacggattccataggtaaaagtttggataagtgtacaaaaatatgaaccatctgcatgaacctataattttaag 427  Q
    ||||||||||||||| |||||||||| | |||||||||| ||||| ||||| | ||   | ||| ||||| || | ||| ||||||||||||| ||||||    
24310135 aaggtatttgtctatgaactccggtggatggattccatacgtaaatgtttgaaaaacactccaacaatataaaacctctacatgaacctataactttaag 24310036  T
428 atcaaagtcaagtttgtgatgcagaaaattggggttcagtgaagcaagagcataatgatcggtaaacaatgaatccaaagctatggatcaaagttcagaa 527  Q
    |||||| | |  |||  || |   |||||| ||||||| |  |||| ||||| ||| |   |||||||||||||| |||||||| |||| || ||||| |    
24310035 atcaaaatgagatttaggaagatcaaaattagggttcaatagagcaggagcagaatcagaagtaaacaatgaatctaaagctatagatcgaaattcagga 24309936  T
528 gtttctgttaagaacagaattcgacgagtgtgggttgcagaggtaagt 575  Q
     || |||||| ||| ||||||| ||| ||||| |||| ||| ||||||    
24309935 attcctgttatgaagagaattctacgggtgtgtgttgaagaagtaagt 24309888  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 567
Target Start/End: Complemental strand, 24322256 - 24322181
Alignment:
492 aacaatgaatccaaagctatggatcaaagttcagaagtttctgttaagaacagaattcgacgagtgtgggttgcag 567  Q
    ||||||||||| |||| ||| |||| || || || | |||||||||  |||||||||||||||||||| |||||||    
24322256 aacaatgaatctaaaggtatagatcgaaattgaggaatttctgttacaaacagaattcgacgagtgtgtgttgcag 24322181  T

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Target: chr3 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 49603075 - 49603360
Alignment:
19 cagagagggagtttgtttgttcactatgagaaaga----aagaaagaaaccgtgattgtaaattgtggatggtgggacctgtgttgtgttggtataaatc 114  Q
    ||||||||||||||||||||||||| |||||||||    |||||||||| ||||||||| |||||||||||| ||||| |||||||||||||| | ||||    
49603075 cagagagggagtttgtttgttcactgtgagaaagagagaaagaaagaaagcgtgattgtgaattgtggatggcgggacgtgtgttgtgttggtgtgaatc 49603174  T
115 ataattgtgttggctgggccttgggattgggcagttgggctactgggtgggattgtttgatattttagaaattgctagcagtagtgggtggggtgttatt 214  Q
    | ||||||||| | |||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||| ||||| |||| ||||||||||||||    
49603175 agaattgtgttagttgggccttgggattgggcagttaggctactgggtaggagtgtttgatattttagaaattgttagcaatagtaggtggggtgttatt 49603274  T
215 agcagtatatgtatatgtatat-atnnnnnnnnntagagaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcc 299  Q
    |||||||||| ||||||||||| |          |||| |||||||||||||||||||||||| ||||||||||||||||||||||    
49603275 agcagtatatatatatgtatataaaaaaaaaaattagaaaagtttgtgcaggcaggagcccccgcaatcatgtgagtggctccgcc 49603360  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 36840782 - 36840828
Alignment:
259 gtgcaggcaggagcccccacaatcatgtgagtggctccgcccctgat 305  Q
    ||||||||| ||||||||||||| |||||||||| |||||| |||||    
36840782 gtgcaggcacgagcccccacaataatgtgagtggttccgcctctgat 36840828  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 41451213 - 41451257
Alignment:
259 gtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg 303  Q
    ||||||||||||||||||||| | |||||||||||||||||||||    
41451213 gtgcaggcaggagcccccacactgatgtgagtggctccgcccctg 41451257  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 53232830 - 53232876
Alignment:
256 tttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccct 302  Q
    ||||||||||||||||||| ||||| | |||| ||||||||||||||    
53232830 tttgtgcaggcaggagcccacacaagcttgtgtgtggctccgcccct 53232876  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 303
Target Start/End: Complemental strand, 3293785 - 3293738
Alignment:
256 tttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg 303  Q
    ||||||||||||||||||| ||||| | |||| |||||||||||||||    
3293785 tttgtgcaggcaggagcccacacaaccttgtgtgtggctccgcccctg 3293738  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 303
Target Start/End: Original strand, 10711679 - 10711726
Alignment:
256 tttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg 303  Q
    ||||||||||||||||||| ||||| | |||| |||||||||||||||    
10711679 tttgtgcaggcaggagcccacacaaccttgtgtgtggctccgcccctg 10711726  T

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Target: scaffold0197 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 255 - 299
Target Start/End: Original strand, 26288 - 26332
Alignment:
255 gtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcc 299  Q
    |||||||||||||||||||| ||||| | |||| |||||||||||    
26288 gtttgtgcaggcaggagcccacacaaccttgtgtgtggctccgcc 26332  T

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