View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9064_low_4 (Length: 664)
Name: NF9064_low_4
Description: NF9064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9064_low_4 |
 |  |
|
| [»] scaffold0197 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 303
Target Start/End: Original strand, 12587528 - 12587811
Alignment:
| Q |
19 |
cagagagggagtttgtttgttcactatgagaaagaaagaaagaaaccgtgattgtaaattgtggatggtgggacctgtgttgtgttggtataaatcataa |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| || |
|
|
| T |
12587528 |
cagagagggagtttgtttgttcactgtgagaaagaaagaaagaaaccgtgattgtaaattgtggatggcgggacctgtgttgtgttggtgtaaatcagaa |
12587627 |
T |
 |
| Q |
119 |
ttgtgttggctgggccttgggattgggcagttgggctactgggtgggattgtttgatattttagaaattgctagcagtagtgggtggggtgttattagca |
218 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12587628 |
ttgtgttagctgggccttgggattgggcagttgggctactgggtgggattgtttgatattttagaaattgctagcagtagtgggtggggtgttattagca |
12587727 |
T |
 |
| Q |
219 |
gtatatgtatatgtatatatnnnnnnnnntagagaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg |
303 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12587728 |
gtatatgtatatgtata-aaaaaaaaaaatagagaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg |
12587811 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 256 - 303
Target Start/End: Original strand, 27324864 - 27324911
Alignment:
| Q |
256 |
tttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg |
303 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27324864 |
tttgtgcatgtaggagcccccacaatcatgtgagtggctccgcccctg |
27324911 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 27324642 - 27324691
Alignment:
| Q |
19 |
cagagagggagtttgtttgttcactatgagaaagaaagaaagaaaccgtg |
68 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
27324642 |
cagagagggagtttgtttgttcaccgtgagaaagaaagaaagaaaacgtg |
27324691 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 303
Target Start/End: Complemental strand, 26647297 - 26647250
Alignment:
| Q |
256 |
tttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg |
303 |
Q |
| |
|
||||||||||||||||||| ||||| | |||| ||||||||||||||| |
|
|
| T |
26647297 |
tttgtgcaggcaggagcccacacaaccttgtgtgtggctccgcccctg |
26647250 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 257 - 299
Target Start/End: Complemental strand, 34054197 - 34054155
Alignment:
| Q |
257 |
ttgtgcaggcaggagcccccacaatcatgtgagtggctccgcc |
299 |
Q |
| |
|
||||||||| ||||||||||||| || |||||||||||||||| |
|
|
| T |
34054197 |
ttgtgcaggtaggagcccccacactcttgtgagtggctccgcc |
34054155 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 29283695 - 29283732
Alignment:
| Q |
257 |
ttgtgcaggcaggagcccccacaatcatgtgagtggct |
294 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
29283695 |
ttgtgcaggcaggagcccccacactcttgtgagtggct |
29283732 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 183; Significance: 1e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 6900628 - 6900343
Alignment:
| Q |
19 |
cagagagggagtttgtttgttcactatgagaaagaaagaaagaaaccgtgattgtaaattgtggatggtgggacctgtgttgtgttggtataaatcataa |
118 |
Q |
| |
|
||||||||| ||||||||||||||| | ||||||||||||||||| ||||||||| |||||||||||| ||||| |||||||||||||| | ||||| || |
|
|
| T |
6900628 |
cagagagggtgtttgtttgttcactgtaagaaagaaagaaagaaagcgtgattgtgaattgtggatggcgggacgtgtgttgtgttggtgtgaatcagaa |
6900529 |
T |
 |
| Q |
119 |
ttgtgttggctgggccttgggattgggcagttgggctactgggtgggattgtttgatattttagaaattgctagcagtagtgggtggggtgttattagca |
218 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6900528 |
ttgtgttaactgggccttgggattgggcagttgggctactgagtgggagtgtttgatattttagaaattgctagcaatagtgggtggggtgttattagca |
6900429 |
T |
 |
| Q |
219 |
gtatatgtatatgtatat-atnnnnnnnnntagagaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg |
303 |
Q |
| |
|
|||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6900428 |
gtatatgtatatgtatataaaaaaaaaaattagaaaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg |
6900343 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 172; Significance: 4e-92; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 19 - 302
Target Start/End: Complemental strand, 22970102 - 22969821
Alignment:
| Q |
19 |
cagagagggagtttgtttgttcactatgagaaagaaagaaagaaa----ccgtgattgtaaattgtggatggtgggacctgtgttgtgttggtataaatc |
114 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| | |||||| |
|
|
| T |
22970102 |
cagagagggagtttgtttgttcactgtgagaaagaaagaaagaaagaaaccgtgattgtaaattgtggatggcgggacgtgtgttgtgttgatgtaaatc |
22970003 |
T |
 |
| Q |
115 |
ataattgtgttggctgggccttgggattgggcagttgggctactgggtgggattgtttgatattttagaaattgctagcagtagtgggtggggtgttatt |
214 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22970002 |
agaattgtgttagctgggccttgggattgggcagttgggctactgggtgggagtgtttgatattttagaaattgctagcagtagtgggtggggtgttatt |
22969903 |
T |
 |
| Q |
215 |
agcagtatatgtatatgtatatatnnnnnnnnntagagaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccct |
302 |
Q |
| |
|
|||||||||||| ||| | | | |||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
22969902 |
agcagtatatgtttataaaaaaa------aatttagaaaagtttgtgcaggcaggagcccccttaatcatgtgagtggctccgcccct |
22969821 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 112 - 303
Target Start/End: Complemental strand, 22962718 - 22962526
Alignment:
| Q |
112 |
atcataattgtgttggctgggccttgggattgggcagttgggctactgggtgggattgtttgatattttagaaattgct--agcagtagtgggtggggtg |
209 |
Q |
| |
|
|||| ||||||||| ||||||| |||||||||||||||||||||| |||||| || |||||||||||||||||||| || |||| |||||||||||||| |
|
|
| T |
22962718 |
atcagaattgtgttagctgggctttgggattgggcagttgggctattgggtgagagtgtttgatattttagaaattactaaagcaatagtgggtggggtg |
22962619 |
T |
 |
| Q |
210 |
ttattagcagtatatgtatatgtatat-atnnnnnnnnntagagaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg |
303 |
Q |
| |
|
|||||||||||||| ||||||||||| | |||| || |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22962618 |
ttattagcagtata--tatatgtatataaaaaaaaaaattagaaaaatttgtgcaggcaggagcccccacaatcatgtgagtggctctgcccctg |
22962526 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 21312015 - 21312066
Alignment:
| Q |
255 |
gtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctgatt |
306 |
Q |
| |
|
|||||||||||||||||||| ||||| | |||| ||||||||||| |||||| |
|
|
| T |
21312015 |
gtttgtgcaggcaggagcccacacaaccttgtgtgtggctccgccactgatt |
21312066 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 4e-92; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 21880523 - 21880804
Alignment:
| Q |
19 |
cagagagggagtttgtttgttcactatgagaa----agaaagaaagaaaccgtgattgtaaattgtggatggtgggacctgtgttgtgttggtataaatc |
114 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | |||||| |
|
|
| T |
21880523 |
cagagagggagtttgtttgttcactgtgagaaagaaagaaagaaagaaaccgtgattgtaaattgtggatggcgggacgtgtgttgtgttgatgtaaatc |
21880622 |
T |
 |
| Q |
115 |
ataattgtgttggctgggccttgggattgggcagttgggctactgggtgggattgtttgatattttagaaattgctagcagtagtgggtggggtgttatt |
214 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21880623 |
agaattgtgttagctgggccttgggattgggcagttgggctactgggtgggagtgtttgatattttagaaattgctagcagtagtgggtggggtgttatt |
21880722 |
T |
 |
| Q |
215 |
agcagtatatgtatatgtatatatnnnnnnnnntagagaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccct |
302 |
Q |
| |
|
|||||||||||| ||| | | | |||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
21880723 |
agcagtatatgtttataaaaaaa------aatttagaaaagtttgtgcaggcaggagcccccttaatcatgtgagtggctccgcccct |
21880804 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 304 - 527
Target Start/End: Complemental strand, 24365324 - 24365101
Alignment:
| Q |
304 |
atttgaaatgtgaaaaattacaataaggtatttgtctataaactccggtgcacggattccataggtaaaagtttggataagtgtacaaaaatatgaacca |
403 |
Q |
| |
|
||||||||||||||| |||| ||||| ||||||| |||| |||||| || | ||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
24365324 |
atttgaaatgtgaaagattagaataaagtatttgcctatgaactccattggatggattccatagctaaaagtttggataagagtacaaaaatatgaaccc |
24365225 |
T |
 |
| Q |
404 |
tctgcatgaacctataattttaagatcaaagtcaagtttgtgatgcagaaaattggggttcagtgaagcaagagcataatgatcggtaaacaatgaatcc |
503 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||||| | | ||||||||||||| || ||||||| |||| ||||||| ||||||||||||||| |
|
|
| T |
24365224 |
tctacatgaacctataattttaagatcaaaatcaagtttgtcaagtggaaaattggggttaagagaagcaaaagcagaatgatctgtaaacaatgaatcc |
24365125 |
T |
 |
| Q |
504 |
aaagctatggatcaaagttcagaa |
527 |
Q |
| |
|
||| ||||||||| ||||| |||| |
|
|
| T |
24365124 |
aaaactatggatcgaagtttagaa |
24365101 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 362 - 567
Target Start/End: Complemental strand, 24415758 - 24415555
Alignment:
| Q |
362 |
ccataggtaaaagtttggataagtgtacaaaaatatgaaccatctgcatgaacctataattttaagatcaaagtcaagtttgtgatgcagaaaattgggg |
461 |
Q |
| |
|
||||||||||| ||||| ||||| ||| ||||||||||||| ||| ||||||||||||||||| | | || |||||||||||| | |||||| ||| |
|
|
| T |
24415758 |
ccataggtaaatgtttgtataagagtaaaaaaatatgaaccctctacatgaacctataattttgataggtaaatcaagtttgtga---acaaaattaggg |
24415662 |
T |
 |
| Q |
462 |
ttcagtgaagcaagagcataatgatcggtaaa-caatgaatccaaagctatggatcaaagttcagaagtttctgttaagaacagaattcgacgagtgtgg |
560 |
Q |
| |
|
|| ||| ||| | ||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
24415661 |
ttaagtaaagtaggagcagaatgatcggtaaaacaatgaatccaaagctatggatcgaagttcagaagtctctgttacgaacagaattcgacgagtgtgt |
24415562 |
T |
 |
| Q |
561 |
gttgcag |
567 |
Q |
| |
|
||||||| |
|
|
| T |
24415561 |
gttgcag |
24415555 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 481 - 599
Target Start/End: Complemental strand, 24365098 - 24364976
Alignment:
| Q |
481 |
aatgatcggtaaacaatgaatccaaagctatggatcaaagttcagaagtttctgttaagaacagaattcgacgagtgtgggt------tgcagaggtaag |
574 |
Q |
| |
|
|||||| ||||||||||||||| |||| |||||||| || |||| ||||||| || |||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
24365098 |
aatgattggtaaacaatgaatctaaagttatggatcgaacttcataagtttc--ttgagaacagaattcgatgagtgtgggttgcagatgcagaggtaag |
24365001 |
T |
 |
| Q |
575 |
taatagtcttattctttagtatttt |
599 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
24365000 |
taatagtcttattctttagtatttt |
24364976 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 575 - 646
Target Start/End: Complemental strand, 25338043 - 25337972
Alignment:
| Q |
575 |
taatagtcttattctttagtattttaagcctccttcacatgtgagttggggttcaaatcctcaaggctccca |
646 |
Q |
| |
|
||||||||||||| ||| |||||||||||| ||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
25338043 |
taatagtcttattgttttgtattttaagcccccttcacgtgtgagttggggttcaaatcttcaaggctccca |
25337972 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 328 - 575
Target Start/End: Complemental strand, 24310135 - 24309888
Alignment:
| Q |
328 |
aaggtatttgtctataaactccggtgcacggattccataggtaaaagtttggataagtgtacaaaaatatgaaccatctgcatgaacctataattttaag |
427 |
Q |
| |
|
||||||||||||||| |||||||||| | |||||||||| ||||| ||||| | || | ||| ||||| || | ||| ||||||||||||| |||||| |
|
|
| T |
24310135 |
aaggtatttgtctatgaactccggtggatggattccatacgtaaatgtttgaaaaacactccaacaatataaaacctctacatgaacctataactttaag |
24310036 |
T |
 |
| Q |
428 |
atcaaagtcaagtttgtgatgcagaaaattggggttcagtgaagcaagagcataatgatcggtaaacaatgaatccaaagctatggatcaaagttcagaa |
527 |
Q |
| |
|
|||||| | | ||| || | |||||| ||||||| | |||| ||||| ||| | |||||||||||||| |||||||| |||| || ||||| | |
|
|
| T |
24310035 |
atcaaaatgagatttaggaagatcaaaattagggttcaatagagcaggagcagaatcagaagtaaacaatgaatctaaagctatagatcgaaattcagga |
24309936 |
T |
 |
| Q |
528 |
gtttctgttaagaacagaattcgacgagtgtgggttgcagaggtaagt |
575 |
Q |
| |
|
|| |||||| ||| ||||||| ||| ||||| |||| ||| |||||| |
|
|
| T |
24309935 |
attcctgttatgaagagaattctacgggtgtgtgttgaagaagtaagt |
24309888 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 567
Target Start/End: Complemental strand, 24322256 - 24322181
Alignment:
| Q |
492 |
aacaatgaatccaaagctatggatcaaagttcagaagtttctgttaagaacagaattcgacgagtgtgggttgcag |
567 |
Q |
| |
|
||||||||||| |||| ||| |||| || || || | ||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
24322256 |
aacaatgaatctaaaggtatagatcgaaattgaggaatttctgttacaaacagaattcgacgagtgtgtgttgcag |
24322181 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 49603075 - 49603360
Alignment:
| Q |
19 |
cagagagggagtttgtttgttcactatgagaaaga----aagaaagaaaccgtgattgtaaattgtggatggtgggacctgtgttgtgttggtataaatc |
114 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||| |||||||||||| ||||| |||||||||||||| | |||| |
|
|
| T |
49603075 |
cagagagggagtttgtttgttcactgtgagaaagagagaaagaaagaaagcgtgattgtgaattgtggatggcgggacgtgtgttgtgttggtgtgaatc |
49603174 |
T |
 |
| Q |
115 |
ataattgtgttggctgggccttgggattgggcagttgggctactgggtgggattgtttgatattttagaaattgctagcagtagtgggtggggtgttatt |
214 |
Q |
| |
|
| ||||||||| | |||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||| ||||| |||| |||||||||||||| |
|
|
| T |
49603175 |
agaattgtgttagttgggccttgggattgggcagttaggctactgggtaggagtgtttgatattttagaaattgttagcaatagtaggtggggtgttatt |
49603274 |
T |
 |
| Q |
215 |
agcagtatatgtatatgtatat-atnnnnnnnnntagagaagtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcc |
299 |
Q |
| |
|
|||||||||| ||||||||||| | |||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
49603275 |
agcagtatatatatatgtatataaaaaaaaaaattagaaaagtttgtgcaggcaggagcccccgcaatcatgtgagtggctccgcc |
49603360 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 36840782 - 36840828
Alignment:
| Q |
259 |
gtgcaggcaggagcccccacaatcatgtgagtggctccgcccctgat |
305 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||| |||||| ||||| |
|
|
| T |
36840782 |
gtgcaggcacgagcccccacaataatgtgagtggttccgcctctgat |
36840828 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 41451213 - 41451257
Alignment:
| Q |
259 |
gtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg |
303 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
41451213 |
gtgcaggcaggagcccccacactgatgtgagtggctccgcccctg |
41451257 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 53232830 - 53232876
Alignment:
| Q |
256 |
tttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccct |
302 |
Q |
| |
|
||||||||||||||||||| ||||| | |||| |||||||||||||| |
|
|
| T |
53232830 |
tttgtgcaggcaggagcccacacaagcttgtgtgtggctccgcccct |
53232876 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 303
Target Start/End: Complemental strand, 3293785 - 3293738
Alignment:
| Q |
256 |
tttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg |
303 |
Q |
| |
|
||||||||||||||||||| ||||| | |||| ||||||||||||||| |
|
|
| T |
3293785 |
tttgtgcaggcaggagcccacacaaccttgtgtgtggctccgcccctg |
3293738 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 303
Target Start/End: Original strand, 10711679 - 10711726
Alignment:
| Q |
256 |
tttgtgcaggcaggagcccccacaatcatgtgagtggctccgcccctg |
303 |
Q |
| |
|
||||||||||||||||||| ||||| | |||| ||||||||||||||| |
|
|
| T |
10711679 |
tttgtgcaggcaggagcccacacaaccttgtgtgtggctccgcccctg |
10711726 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 255 - 299
Target Start/End: Original strand, 26288 - 26332
Alignment:
| Q |
255 |
gtttgtgcaggcaggagcccccacaatcatgtgagtggctccgcc |
299 |
Q |
| |
|
|||||||||||||||||||| ||||| | |||| ||||||||||| |
|
|
| T |
26288 |
gtttgtgcaggcaggagcccacacaaccttgtgtgtggctccgcc |
26332 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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