View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9064_low_6 (Length: 499)
Name: NF9064_low_6
Description: NF9064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9064_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 17 - 481
Target Start/End: Original strand, 5709577 - 5710041
Alignment:
| Q |
17 |
agcagagagttccaagtacttagcattagttacctttgttgcaatcattaaaattatacaagtacaataagcttgattctgtttttctcaaaatttggaa |
116 |
Q |
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| T |
5709577 |
agcagtgagttccaagtacttagcattagttacctttgttgcaatcattaaaattatacaagtacaataagtttgattctgtttttctcaaaatttggaa |
5709676 |
T |
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| Q |
117 |
ttctcttctgcagatatgcgacatggttgctattgcaagacatttaaatgtcactctcattgttccagagcttgataaatcgtctttctgggctgatcca |
216 |
Q |
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| T |
5709677 |
ttctcttctgcagatatgcgacatggttgctattgcaagacatttaaatgtcactctcattgttccagagcttgataaatcgtctttctgggctgatcca |
5709776 |
T |
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| Q |
217 |
aggtttgcacatttgtattgtttgcattataaataactttagttgagaaaacatctccatttatgattatcttccatgatttcttaattgaaatgtcctc |
316 |
Q |
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| T |
5709777 |
aggtttgcacatttgtattgtttgcatcataaataactttagttgagaaaacatctccatttatgattatcttccatgatttcttaatagaaatgtcctc |
5709876 |
T |
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| Q |
317 |
tttttggtaccttgatgttgcagtgagttccaagacatatttgatgtagataatttcattgcatctttgagagatgaagttagaatattaaaggaactac |
416 |
Q |
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| T |
5709877 |
tttttgttaccttgatgttgcagtgagttccaagacatatttgatgtagataatttcattgcatctttgagagatgaagttagaatattaaaggaactac |
5709976 |
T |
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| Q |
417 |
cacctaggctcaagagaagagttgaattaggaatgtcttactcattgcccccgattagttggtcg |
481 |
Q |
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| T |
5709977 |
cacctaggctcaagagaagagttgaattaggaatgtcttactcattgcccccgattagttggtcg |
5710041 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 393
Target Start/End: Original strand, 45806468 - 45806530
Alignment:
| Q |
331 |
atgttgcagtgagttccaagacatatttgatgtagataatttcattgcatctttgagagatga |
393 |
Q |
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| T |
45806468 |
atgttccagtgaattccaagacatatttgatgtggatcattttatcacatccttgagagatga |
45806530 |
T |
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