View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9064_low_8 (Length: 485)
Name: NF9064_low_8
Description: NF9064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9064_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 438; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 11 - 468
Target Start/End: Original strand, 1346587 - 1347044
Alignment:
| Q |
11 |
cacagaaaagaacaaaagctaattgcaagttaaaacggccaaacacaaatttccggtcagacacgacatcaaaaagccctcggcagaagatgaaattgac |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1346587 |
cacagaaaagaacaaaagctaattgcaagttaaaacggccaaacacaaatttccggtcagacacgacatcaaaaagccctcggcagaagatgaaattgac |
1346686 |
T |
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| Q |
111 |
agcagacaaacgaacaggttgatatattagcagaacaacacaccacaaaccaaacaaagattctgctaatccactcccaaactaaaaagctttgttttta |
210 |
Q |
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|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1346687 |
agcagacaaacgaacaagttgatctattagcagaacaacacaccacaaaccaaacaaagattctgctaatccactcccaaactaaaaagctttgttttta |
1346786 |
T |
|
| Q |
211 |
ataagtcaatacgaggagctactagattttgaaaagagtttccatgctataacaacaaagcaagtttgggaaatatgctcaaaacatatgaagcagatcc |
310 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1346787 |
ataagtcaatatgaggagctactagattttgaaaagagtttccatgctataacaacaaagcaagtttgggaaatatgctcaaaacatatgaagcagatcc |
1346886 |
T |
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| Q |
311 |
aatttaacgaaaaaggttgcaaggcttaaaacaagaatttgagctgattgaattttgcaaaaatgaaagtattcatgattttttacgaatggatacgttg |
410 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1346887 |
aatttaacgaaaaaggttacaaggcttaaaacaagaatttgagctgattgaattttgcaaagatgaaagtattcatgattttttacgaatggatacgttg |
1346986 |
T |
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| Q |
411 |
gtcaatgaagcgaagaataatataacagaaaaacaagtcatgaagaaaattgtgtata |
468 |
Q |
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| T |
1346987 |
gtcaatgaagcgaagaataatataacagaaaaacaagtcatgaagaaaattgtgtata |
1347044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 301
Target Start/End: Original strand, 19652915 - 19653021
Alignment:
| Q |
196 |
aaagctttgtttttaataagtcaatacgaggagctactagattttgaaaagagtttccatgctataacaacaaagcaagtttgggaaa-tatgctcaaaa |
294 |
Q |
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||||||||||||| |||||||||||| ||| || ||| |||| |||| || | |||||||||||||||||||| || |||| ||| ||||| ||||| |
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| T |
19652915 |
aaagctttgttttaaataagtcaatatgagcagataccagatcttgagaaaaaattccatgctataacaacaaatgaaacttggaaaattatgcacaaaa |
19653014 |
T |
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| Q |
295 |
catatga |
301 |
Q |
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||||||| |
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| T |
19653015 |
catatga |
19653021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 413
Target Start/End: Complemental strand, 19807927 - 19807813
Alignment:
| Q |
302 |
agcagatccaatttaacgaaaaaggttgcaaggcttaaaacaagaatttgagctgattgaattttgcaaaaatgaaagtat---tcatgattttttacga |
398 |
Q |
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| T |
19807927 |
agcagatccaacataacggacaaggttgcgtggcttaaaaagacaatttgagttgattgaacatttcaaagatgaaagtatttgtcattatttttcacga |
19807828 |
T |
|
| Q |
399 |
atggatacgttggtc |
413 |
Q |
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||||| | ||||||| |
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| T |
19807827 |
atggacaagttggtc |
19807813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 252 - 430
Target Start/End: Complemental strand, 40036960 - 40036781
Alignment:
| Q |
252 |
ccatgctataacaacaaagcaagtttgggaaat-atgctcaaaacatatgaagcagatccaatttaacgaaaaaggttgcaaggcttaaaacaagaattt |
350 |
Q |
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|||||||||||||| ||| |||| ||||||||| |||||||||||| ||| |||| ||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
40036960 |
ccatgctataacaataaaacaagcttgggaaattatgctcaaaacacatggagcaaatccaatttaacgaaaaaggttgcaagacttaaaacaacaattt |
40036861 |
T |
|
| Q |
351 |
gagctgattgaattttgcaaaaatgaaagtattcatgattttttacgaatggatacgttggtcaatgaagcgaagaataa |
430 |
Q |
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| T |
40036860 |
gagctgattgaattttacaaagatgaaagcattcatgattttttacgaatggatatgttggtcaataaaaccaagaataa |
40036781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 247 - 430
Target Start/End: Complemental strand, 40031623 - 40031437
Alignment:
| Q |
247 |
agtttccatgctata--acaacaaagcaagtttgggaaat-atgctcaaaacatatgaagcagatccaatttaacgaaaaaggttgcaaggcttaaaaca |
343 |
Q |
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||||||||||||||| | | ||||||||| ||||||||| |||||||||||| ||| |||| ||||| ||||| ||||||||||||||| ||||||||| |
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| T |
40031623 |
agtttccatgctatataatagcaaagcaagcttgggaaattatgctcaaaacacatggagcaaatccagtttaaagaaaaaggttgcaagacttaaaaca |
40031524 |
T |
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| Q |
344 |
agaatttgagctgattgaattttgcaaaaatgaaagtattcatgattttttacgaatggatacgttggtcaatgaagcgaagaataa |
430 |
Q |
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| T |
40031523 |
acaatttgagcttattgaattttacaaagataaaaatattcctgattttttacaaatagatacattggtcaataaaccgaagaataa |
40031437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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