View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9064_low_9 (Length: 454)
Name: NF9064_low_9
Description: NF9064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9064_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 41695942 - 41696362
Alignment:
| Q |
1 |
ttttgttgaaaggttgatgccaactagtcaagtagttaagggtaaggctcaatcaaacatttcagaaccaaaagagtaaagctaaaagccaaggaacatg |
100 |
Q |
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| T |
41695942 |
ttttgttgaaaggttgatgccaactagtcaagtagttaagggtaaggctcaatcaaacatttcagaaccaaaagagtaaagctaaaagccaaggaacatg |
41696041 |
T |
|
| Q |
101 |
gaaaacaacctttatctttcagcaactactaggtccatgattaattaagcaagtaggtgttnnnnnnncatagacagagaggatggacaaaatcatgaaa |
200 |
Q |
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| T |
41696042 |
gaaaacaacctttatctttcagcaactactaggtccatgattaattaagcaagtaggtgttaaaaaaacatagacagagaggatggacaaaatcatgaaa |
41696141 |
T |
|
| Q |
201 |
cgcatggtttatggagtgtcaatgtgtcatcatgctctagccaccaacccgaccacattcccaacaagcaccatctagaaattagaatccaaatgctagc |
300 |
Q |
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| T |
41696142 |
cgcatggtttatggagtgtcaatgtgtcatcatgctctagccaccaacccgaccacattcccaacaagcaccatctagaaattagaatccaaatgctagc |
41696241 |
T |
|
| Q |
301 |
ttccaagttccattccaacattaaatgaaaatccaacttatatggtcatagaagttggtttttgttagtattttttaggttgctctgaatttataaccaa |
400 |
Q |
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| T |
41696242 |
ttccaagttccattccaacattaaatgaaaatccaacttatatggtcatagaagttg----------gtcttttttaggttgctctgaatttataaccaa |
41696331 |
T |
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| Q |
401 |
tattagtagtactaaaataataataattttg |
431 |
Q |
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| T |
41696332 |
tattagtagtactaaaataataataattttg |
41696362 |
T |
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