View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9065_low_1 (Length: 535)

Name: NF9065_low_1
Description: NF9065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9065_low_1
NF9065_low_1
[»] chr4 (2 HSPs)
chr4 (32-525)||(4673903-4674390)
chr4 (112-218)||(51626285-51626391)
[»] chr1 (4 HSPs)
chr1 (146-238)||(28724708-28724800)
chr1 (111-218)||(18428120-18428226)
chr1 (174-207)||(19238840-19238873)
chr1 (159-207)||(36522262-36522310)
[»] chr3 (7 HSPs)
chr3 (111-214)||(27763781-27763884)
chr3 (111-223)||(1642657-1642769)
chr3 (136-236)||(22288273-22288373)
chr3 (170-242)||(22288553-22288625)
chr3 (123-233)||(39950253-39950363)
chr3 (112-224)||(38331178-38331290)
chr3 (111-207)||(48204289-48204385)
[»] chr5 (3 HSPs)
chr5 (111-218)||(10591983-10592090)
chr5 (136-207)||(29553606-29553677)
chr5 (104-206)||(5051657-5051760)
[»] chr7 (1 HSPs)
chr7 (135-236)||(45778902-45779003)
[»] chr6 (3 HSPs)
chr6 (135-218)||(28099299-28099382)
chr6 (140-207)||(17457073-17457140)
chr6 (146-207)||(12411215-12411276)
[»] chr8 (2 HSPs)
chr8 (135-218)||(2743989-2744072)
chr8 (188-269)||(27121805-27121886)


Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 32 - 525
Target Start/End: Complemental strand, 4674390 - 4673903
Alignment:
Q  32 caaacagatttatatctacacatagttgactgttagactctttagagnnnnnnnnnnnnngataacacataattttctagtgtaaatctgatatcctctg 131  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||| ||||||||||||    
T  4674390 caaacagattaatatctacacatagttgactgttagactctttagagaaaaaggaaaaaagataacacataattttctagtgtaaatatgatatcctctg 4674291  T
Q  132 catgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatgttcaaaactgaat 231  Q
    |||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||| |||||| |||||||||| |||||||| ||||||| |||    
T  4674290 catgcaactgcagtgattaatcccttaagcattgcaggatttaaatggacgacaaactctttctaaaaattttaacaccattgcatgtccaaaactaaat 4674191  T
Q  232 tcgaatctaaatcattggttaaactagaaaaaacccgtatca-tcccatccaaacgcttctttgctagataatacataattaatcacacaaaaatggaat 330  Q
    ||||| | |||||||||||||||||| ||||||     |||| || |||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  4674190 tcgaacccaaatcattggttaaactaaaaaaaa-----atcaatcacatccaaacgctt--ttgctagataatacataattaatcacacaaaaatggaat 4674098  T
Q  331 tagatattaacaattctgcatataatctatgagccacagccacaagttctctaggagcaatcactatcaaggacaaaaagttggtccacatcgaaatcca 430  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4674097 tagatattaacaattctgcatataatctatgaaccacagccacaagttctctaggagcaatcactatcaaggacaaaaagttggtccacatcgaaatcca 4673998  T
Q  431 tgtcaccaaccccagataagcaagaggataagctatcccacttcatcaccctcagatggatactctccctaatccaacggctacaaacaccaaac 525  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4673997 tgtcaccaaccccagataagcaagaggataagctatcccacttcatcaccctcagatggatactctccctaatccaacggctacaaacaccaaac 4673903  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 51626285 - 51626391
Alignment:
Q  112 tgtaaatctgatatcctctgcatgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccg 211  Q
    |||||||| | ||||||| ||  |||||||| | |||||||| ||  |||| ||  |||| |||||||||| || ||||| ||||||||||||||||| |    
T  51626285 tgtaaatcgggtatcctccgcgcgcaactgcggagactaatctctcgagcactgtgggacccaaatggacggcagactctccctaaaagttttaacactg 51626384  T
Q  212 ttgcatg 218  Q
     ||||||    
T  51626385 ctgcatg 51626391  T

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Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 28724800 - 28724708
Alignment:
Q  146 gactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatgttcaaaactgaattcgaatc 238  Q
    |||||||||||  | ||||| |||||||||||||||| || ||||||||||| ||||||||||| |||||||||||||  |||||||||||||    
T  28724800 gactaatccctcgaacattgtaggactcaaatggacggcagactcttcctaagagttttaacactgttgcatgttcaaggctgaattcgaatc 28724708  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 218
Target Start/End: Original strand, 18428120 - 18428226
Alignment:
Q  111 gtgtaaatctgatatcctctgcatgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacacc 210  Q
    ||||||||| | ||||||| ||  |||||||||| |||||||||||  |||||||  || | |||||||||  || ||||| |||||||||||||||||     
T  18428120 gtgtaaatcgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtggggc-caaatggacagcagactctccctaaaagttttaacact 18428218  T
Q  211 gttgcatg 218  Q
    | ||||||    
T  18428219 gctgcatg 18428226  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 19238840 - 19238873
Alignment:
Q  174 aaatggacgacaaactcttcctaaaagttttaac 207  Q
    |||||||||||||||||| |||||||||||||||    
T  19238840 aaatggacgacaaactctccctaaaagttttaac 19238873  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 36522262 - 36522310
Alignment:
Q  159 agcattgcaggactcaaatggacgacaaactcttcctaaaagttttaac 207  Q
    |||||||  ||||||||||||||| |||||||| ||||| |||||||||    
T  36522262 agcattgtgggactcaaatggacggcaaactctccctaagagttttaac 36522310  T

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Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 111 - 214
Target Start/End: Complemental strand, 27763884 - 27763781
Alignment:
Q  111 gtgtaaatctgatatcctctgcatgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacacc 210  Q
    ||||||| | ||||||||||||  |||||||| | |||||||||||  |||||||  ||||||||||||||| || ||||| ||||| |||||||||||     
T  27763884 gtgtaaaccggatatcctctgcgcgcaactgcggagactaatccctcgagcattgtgggactcaaatggacggcagactctccctaagagttttaacact 27763785  T
Q  211 gttg 214  Q
    ||||    
T  27763784 gttg 27763781  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 111 - 223
Target Start/End: Complemental strand, 1642769 - 1642657
Alignment:
Q  111 gtgtaaatctgatatcctctgcatgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacacc 210  Q
    ||||||||| ||||||||| ||  |||||||| |  |||||||||| ||| ||||  |||| ||||||||||  | ||||| |||||||||||||||||     
T  1642769 gtgtaaatcggatatcctccgcgcgcaactgcggaaactaatccctcaagtattgtgggacccaaatggacggtagactctccctaaaagttttaacacg 1642670  T
Q  211 gttgcatgttcaa 223  Q
    | |||||||||||    
T  1642669 gctgcatgttcaa 1642657  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 22288373 - 22288273
Alignment:
Q  136 caactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatgttcaaaactgaattcga 235  Q
    ||||||||| ||||||| |||| || ||||    |||||||||||||||||  ||| ||||| ||||||||||  |||||||||||||  ||||||||||    
T  22288373 caactgcagagactaattccttgagtattgtgtaactcaaatggacgacaagttctccctaagagttttaacattgttgcatgttcaaggctgaattcga 22288274  T
Q  236 a 236  Q
    |    
T  22288273 a 22288273  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 22288625 - 22288553
Alignment:
Q  170 actcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatgttcaaaactgaattcgaatctaaa 242  Q
    ||||||||| |||||||  |||  |||| ||||||| ||| |||||||||||||| ||||||||||| |||||    
T  22288625 actcaaatgtacgacaagttctcactaagagttttagcactgttgcatgttcaaagctgaattcgaacctaaa 22288553  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 123 - 233
Target Start/End: Complemental strand, 39950363 - 39950253
Alignment:
Q  123 tatcctctgcatgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatgttca 222  Q
    ||||||| |||||||||||| | ||||||||| |  |||||||  |||  |||||| |||||| | ||| ||||||| ||||||| | | ||||||| ||    
T  39950363 tatcctccgcatgcaactgcggagactaatccttcgagcattgtcggatccaaatgaacgacagattctccctaaaaattttaacgctgctgcatgtcca 39950264  T
Q  223 aaactgaattc 233  Q
    |||||| ||||    
T  39950263 aaactggattc 39950253  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 224
Target Start/End: Complemental strand, 38331290 - 38331178
Alignment:
Q  112 tgtaaatctgatatcctctgcatgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccg 211  Q
    |||||||| | ||||||| || ||||||||| | ||||||||||| || |||||  |||| ||||||| || ||| ||||  |||| ||||||||| | |    
T  38331290 tgtaaatcgggtatcctccgcgtgcaactgcggagactaatccctcaaacattgtgggacccaaatgggcggcaagctctctctaagagttttaacgctg 38331191  T
Q  212 ttgcatgttcaaa 224  Q
     |||||| |||||    
T  38331190 ctgcatgctcaaa 38331178  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 207
Target Start/End: Original strand, 48204289 - 48204385
Alignment:
Q  111 gtgtaaatctgatatcctctgcatgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaac 207  Q
    ||||||||| | ||||||| ||  |||||||| |  ||||||||||| |||||||  | || |||||||||||||| |||| |||||  ||||||||    
T  48204289 gtgtaaatcgggtatcctccgcgcgcaactgcggaaactaatcccttgagcattgtggaacccaaatggacgacaagctctccctaagggttttaac 48204385  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 218
Target Start/End: Complemental strand, 10592090 - 10591983
Alignment:
Q  111 gtgtaaatctgatatcctctgcatgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacacc 210  Q
    ||||||||| | ||||||| ||  |||||||||| |||||||||||  |||||||  |||||||||||| || || ||||| ||||| |||||||||||     
T  10592090 gtgtaaatcgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgggactcaaatgggcggcagactctccctaagagttttaacact 10591991  T
Q  211 gttgcatg 218  Q
    | ||||||    
T  10591990 gctgcatg 10591983  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 29553677 - 29553606
Alignment:
Q  136 caactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaac 207  Q
    ||||||||| |||||||| ||| ||||||   |||| ||||||||||||||||||| ||||| |||||||||    
T  29553677 caactgcagagactaatctcttgagcattctgggacccaaatggacgacaaactctccctaagagttttaac 29553606  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 206
Target Start/End: Complemental strand, 5051760 - 5051657
Alignment:
Q  104 ttttctagtgtaaatctgatatcctctgcatgcaact-gcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagtt 202  Q
    |||| ||||||||||| |  |||||||||| |||||| ||||  ||||||| ||  |||||||   ||||||||||||||||||| ||| ||||||| ||    
T  5051760 ttttttagtgtaaatcgggcatcctctgcacgcaacttgcagaaactaatctctcgagcattgtgagactcaaatggacgacaaagtctccctaaaattt 5051661  T
Q  203 ttaa 206  Q
    ||||    
T  5051660 ttaa 5051657  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 45779003 - 45778902
Alignment:
Q  135 gcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatgttcaaaactgaattcg 234  Q
    |||||||| | |||||||||||  || ||||   |||||||| |||||||||||  | |||||||| ||||||||||||| |||| ||| ||||||||||    
T  45779003 gcaactgcggagactaatccctcgagtattgtgagactcaaacggacgacaaacaatccctaaaagctttaacaccgttgtatgtccaagactgaattcg 45778904  T
Q  235 aa 236  Q
    ||    
T  45778903 aa 45778902  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 135 - 218
Target Start/End: Complemental strand, 28099382 - 28099299
Alignment:
Q  135 gcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatg 218  Q
    |||||||| | |||||||||||  ||||||   | |||||||||||||||||| ||| ||||||||||||||||| | ||||||    
T  28099382 gcaactgcggagactaatccctcgagcattatggaactcaaatggacgacaaattctccctaaaagttttaacactgctgcatg 28099299  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 17457073 - 17457140
Alignment:
Q  140 tgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaac 207  Q
    ||||| ||||||||| ||||||||||  || || |||| | |||||| ||||||||||||||||||||    
T  17457073 tgcagagactaatcctttaagcattgtgggtcttaaataggcgacaagctcttcctaaaagttttaac 17457140  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 12411276 - 12411215
Alignment:
Q  146 gactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaac 207  Q
    ||||||||||| ||||||||  ||||| |||||| || || ||||||||||| |||||||||    
T  12411276 gactaatccctcaagcattgtgggacttaaatgggcggcagactcttcctaagagttttaac 12411215  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 218
Target Start/End: Complemental strand, 2744072 - 2743989
Alignment:
Q  135 gcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatg 218  Q
    |||||||| | |||||||||||  |||||||  |||| |||||||||||||  |||| ||||| ||||||||||| | ||||||    
T  2744072 gcaactgcggagactaatccctcgagcattgtgggacccaaatggacgacatgctctccctaagagttttaacactgctgcatg 2743989  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 269
Target Start/End: Original strand, 27121805 - 27121886
Alignment:
Q  188 ctcttcctaaaagttttaacaccgttgcatgttcaaaactgaattcgaatctaaatcattggttaaactagaaaaaacccgt 269  Q
    |||||||||||||||||||||| |||||||| | ||| ||| ||||||| | | | | |||||||| |||||| | ||||||    
T  27121805 ctcttcctaaaagttttaacactgttgcatgcttaaagctggattcgaacccagaactttggttaagctagaagagacccgt 27121886  T

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