View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9065_low_3 (Length: 530)
Name: NF9065_low_3
Description: NF9065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9065_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 19931584 - 19931120
Alignment:
| Q |
1 |
tgaaagttgtagacatggtagattgaagagaaagagaatcttgatgaaaagaaaaactcatatcgatttgttttatgnnnnnnnnngcagtttgggaata |
100 |
Q |
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| T |
19931584 |
tgaaagttgtagacatggtagattgaagagaaagagaatcttgatgaaaataaaaactcatttcgatttgttttatgtttctttttgcagtttgggaata |
19931485 |
T |
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| Q |
101 |
tgatgagatgt----ggaagggaatggcatgtgatatatataatgggtttggttcactattattattttattgaacaatacaatgggcaaattaaaataa |
196 |
Q |
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| T |
19931484 |
tgatgagatgtagaaggaagggaatggcatgtgatatatataatgggtttggttcactaatattactttattgaacaatacaatgggcaaattaaaagaa |
19931385 |
T |
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| Q |
197 |
gtatagttttaagtgtagtggtattgatttattcttagagagtccaatagagaaacattattgtaaagaatt-----------gagagttgacaaatgga |
285 |
Q |
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| T |
19931384 |
gtataattttaagtgtagtggtattgatttattcttagagagtcgaattaagaaacattattgtaaagaatttagattttagtgagagttgacaaatgga |
19931285 |
T |
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| Q |
286 |
cacgtaaaagacatagttgagagaga--caagtatacaaagaaacgagtaacgcgtgcaaataaatattgagacaccacctctagcttgttgagaaactt |
383 |
Q |
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| T |
19931284 |
cacgtaaaagacatagttgagagagagacaagtataaaaagaaacgagtaacgcgtgcaaaaaaatattgagacaccaccgctagcttgttgagaaactt |
19931185 |
T |
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| Q |
384 |
aggttttgttggttggttgggaccttttcttttctataatttcacccacgtgatgttattgttat |
448 |
Q |
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| T |
19931184 |
aggttttgttggttggttgggaccttttcttttctataatttcacccacgtgatgttattgttat |
19931120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 448 - 528
Target Start/End: Complemental strand, 19931087 - 19931007
Alignment:
| Q |
448 |
ttgtttttattctgctgctctgtcgatagggtgtattaaatggatttgcataggatgttgtaactgtgcctctgtgctgct |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||| |
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| T |
19931087 |
ttgtttttattctgctgctctgtcgatagggtgtattaaatggatttgtataggatgttgtaactgtgcctttgtgttgct |
19931007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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