View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9065_low_5 (Length: 427)
Name: NF9065_low_5
Description: NF9065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9065_low_5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 17 - 427
Target Start/End: Original strand, 4205427 - 4205838
Alignment:
| Q |
17 |
atctttcggttgagtgctattgttttttcaggattactagtcaataacatcttgaaaggcttcaaatttttcaacctagtgaaaaagaaaaaccatatgt |
116 |
Q |
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| T |
4205427 |
atctttcggttgaatgctattgttttttcaggattactagtcaataacatcttgaaaggcttcaaatttttcaacctagtgaaaaagaaaaaccatatgt |
4205526 |
T |
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| Q |
117 |
catccacaagccaattacat--gtgattatgtgtgagtatatatagggtatgtttcgataaacaacttaatttaaggcttgtaagataagtgattatcac |
214 |
Q |
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| T |
4205527 |
catccacaagccaattacatatgtgattatgtgtgagtatatatagggtatgtttcgataaacaacttaatttaaggcttgtaaggtaagtcattatcat |
4205626 |
T |
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| Q |
215 |
ataagtgcttgtctatacatcatttctatataataagataaaatgatttcacaagtaaacaaaacattattggaaaaaataattgaatggatgaaggtga |
314 |
Q |
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| T |
4205627 |
ataagtgcttgtctatacatcatttctatataataagataaaatgaattcacaagtaaacaaaacattattggaaaaaataattgaatggatgaagggga |
4205726 |
T |
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| Q |
315 |
aaccaaccaatatagatttgaatttgaaccaacaaatttggattgacctaaacaccagtannnnnnntttagaaactcactctgtgtttcatgaaccaat |
414 |
Q |
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| T |
4205727 |
aaccaaccaatatagatttgaatttgaaccaacaaatttggattgacctaaacaccagta-ggggggtttagaaactcactctgtgtttcatgaaccaac |
4205825 |
T |
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| Q |
415 |
aaacaacagcatt |
427 |
Q |
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| T |
4205826 |
aaacaacagcatt |
4205838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 32634225 - 32634281
Alignment:
| Q |
165 |
tgtttcgataaacaacttaatttaaggcttgtaagataagtgattatcacataagtg |
221 |
Q |
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| T |
32634225 |
tgtttggataaacaacttaatttaacgcttataccataagggtttatcacataagtg |
32634281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 23999039 - 23999103
Alignment:
| Q |
167 |
tttcgataaacaacttaatttaaggcttgtaagataagtgattatcacataagtgcttgtctata |
231 |
Q |
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| T |
23999039 |
tttcgataaacaacttaattaaatgcttatagaataagggcttatcatataagtgcttgtgtata |
23999103 |
T |
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