View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9066_low_1 (Length: 649)
Name: NF9066_low_1
Description: NF9066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9066_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 207 - 634
Target Start/End: Original strand, 14145437 - 14145863
Alignment:
| Q |
207 |
accatggtttgagccctattgaatggaatgtgatttttcttgctttgatgtttaaagttctttgttaaagtgtttttaatcgtcaatgtgagcataaatg |
306 |
Q |
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| T |
14145437 |
accatggtttgagccctattgaatggaatgtgatttttcttgctttgttgtttaaagttctttgttaaagtgtttttaatcgtcaatgtgagcataaatg |
14145536 |
T |
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| Q |
307 |
tgaaggnnnnnnnnttgtaattgaatcatgatgannnnnnnngcgattttgaaaatatttcaaaaatatgctttaaacggttagatatttatttaatcgg |
406 |
Q |
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| T |
14145537 |
tgaaggaaaaaaa-ttgtaattgaatcatgatgattttttttgcgattttgaaaatatttcaaaaatatgctttaaacggttagatatttatttaaccgg |
14145635 |
T |
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| Q |
407 |
ttttgttttcaaaaaattaaatgttaatttttgggaggtccaaaaataaaagtgaaaagtggtaaattttcgtggtgtttcatgttgatctgagctgatc |
506 |
Q |
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| T |
14145636 |
ttttgttttcaaaaaattaaatgttaatttttgggaggtccaaaaataaaagtgaaaagtggtaaattttcgtggtgtttcatgttgatctgagctgatc |
14145735 |
T |
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| Q |
507 |
aatgaatttttctcgtcaaaaccttcaaattggacgaatggattctcctagtcaaaatgttgaccattgacttcagaatagagttttgtcttgacaattt |
606 |
Q |
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| T |
14145736 |
aatgaattttcctcggcaaaaccttcaaattggacgaatggattctcctagtcaaaatgttgaccattgacttcagattagagttttgtcttgacaattt |
14145835 |
T |
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| Q |
607 |
gataaatactttatcattgctttgactt |
634 |
Q |
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| T |
14145836 |
gataaatactttatcattgctttgactt |
14145863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 14145249 - 14145396
Alignment:
| Q |
19 |
ctaagagggttaatattgtcgaagaataagaacaaagcattatcaataacgtatgtcttgaaccattagtgaatcaagtatggtttatttttaaactcaa |
118 |
Q |
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| T |
14145249 |
ctaagagggttaatattgtcgaagaataagaacaaagcattatcaataacgtatgtcttgaaccattagtgaatcaagtatggtttatttttaaactcaa |
14145348 |
T |
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| Q |
119 |
tcaatatctataaaaggcaagattgtgcaagaagaatttgtttaaaaa |
166 |
Q |
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| T |
14145349 |
tcaatatctataaaaggcaagattgtgcaagaagaatttgtttaaaaa |
14145396 |
T |
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