View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9066_low_10 (Length: 396)
Name: NF9066_low_10
Description: NF9066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9066_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 24917344 - 24916965
Alignment:
| Q |
1 |
aaattggtcacaaaagtggtagtgcaagcaataccaatgtcacaaataagcacaatcatgagcataatcatagtactatgacatatttcaagtctgtttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24917344 |
aaattggtcacaaaagtggtagtgcaagcaataccaatgtcacaaataagcacaatcatgagcataatcatagtactatgacatatttcaagtctgtttt |
24917245 |
T |
|
| Q |
101 |
caaaagcttttt-acattgataacaaaaacaacctcagaagctgttgcaaatgattcctcaaggaataaagtcagaggagtaacatgtaagtacgatcaa |
199 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24917244 |
caaaagcttttttacattgataacaaaaacaacctcagaagctgttgcaaatgattcctcgaggaataaagtcagaggagtaacatgtaagtacgatcaa |
24917145 |
T |
|
| Q |
200 |
tattttacaatttatttaactatgatgnnnnnnnnggtcaaccctttatatatacttgttttgagattatgaaaaaggaaaacnnnnnnnatttatattt |
299 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24917144 |
tattttacaatttatttaactatgatgttttttttggtcaaccctttatatatacttgttttgagattatgaaaaaggaaaac-ttttttatttatattt |
24917046 |
T |
|
| Q |
300 |
gatcatagtcatgtgttttgtaaaataaagattttattggaatttgcagcttcaacagatgtatcatctgatagttctaag |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24917045 |
gatcatagtcatgtgttttgtaaaataaagattttattggaatatgcagcttcaacagatgtatcatctgatagttctaag |
24916965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University