View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9066_low_11 (Length: 379)

Name: NF9066_low_11
Description: NF9066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9066_low_11
NF9066_low_11
[»] chr5 (15 HSPs)
chr5 (1-371)||(18287791-18288148)
chr5 (271-325)||(31264446-31264500)
chr5 (267-347)||(18607090-18607170)
chr5 (288-338)||(4344737-4344787)
chr5 (284-338)||(42469216-42469270)
chr5 (268-333)||(37472591-37472656)
chr5 (276-333)||(43554521-43554578)
chr5 (287-333)||(2577193-2577239)
chr5 (291-333)||(18162055-18162097)
chr5 (281-319)||(26205767-26205805)
chr5 (282-335)||(6471897-6471950)
chr5 (281-338)||(28588681-28588738)
chr5 (276-333)||(39696001-39696058)
chr5 (276-332)||(7997168-7997224)
chr5 (283-335)||(21577117-21577169)
[»] chr6 (15 HSPs)
chr6 (276-335)||(34446563-34446622)
chr6 (276-334)||(12235521-12235579)
chr6 (276-333)||(12086347-12086404)
chr6 (276-370)||(6389705-6389800)
chr6 (285-371)||(7625083-7625170)
chr6 (276-335)||(30781296-30781355)
chr6 (284-332)||(19602191-19602239)
chr6 (281-348)||(6299497-6299564)
chr6 (281-348)||(6306307-6306374)
chr6 (282-332)||(7569176-7569226)
chr6 (284-330)||(26247429-26247475)
chr6 (302-335)||(21385169-21385202)
chr6 (288-348)||(13211295-13211355)
chr6 (276-332)||(17168465-17168521)
chr6 (291-335)||(28715293-28715337)
[»] chr4 (14 HSPs)
chr4 (282-338)||(20743286-20743342)
chr4 (267-326)||(31243541-31243600)
chr4 (284-348)||(7012051-7012115)
chr4 (276-348)||(24343492-24343564)
chr4 (276-333)||(32910551-32910608)
chr4 (277-333)||(34515877-34515933)
chr4 (280-333)||(18513247-18513300)
chr4 (276-332)||(3144654-3144710)
chr4 (281-333)||(7727966-7728018)
chr4 (281-333)||(14465301-14465353)
chr4 (282-333)||(5654599-5654650)
chr4 (287-333)||(43299984-43300030)
chr4 (287-333)||(43300616-43300662)
chr4 (287-327)||(10546154-10546194)
[»] chr8 (12 HSPs)
chr8 (283-333)||(30068037-30068087)
chr8 (276-347)||(39820415-39820486)
chr8 (276-331)||(28883880-28883935)
chr8 (276-347)||(44067502-44067573)
chr8 (276-330)||(35431142-35431196)
chr8 (276-333)||(1676712-1676769)
chr8 (281-332)||(16869722-16869773)
chr8 (276-326)||(40063958-40064008)
chr8 (280-325)||(3025559-3025604)
chr8 (281-350)||(3658130-3658199)
chr8 (296-348)||(14679319-14679371)
chr8 (271-347)||(22850330-22850406)
[»] chr2 (13 HSPs)
chr2 (282-347)||(12748670-12748735)
chr2 (276-348)||(23354654-23354726)
chr2 (276-348)||(23354997-23355069)
chr2 (281-338)||(10535766-10535823)
chr2 (276-333)||(25544481-25544538)
chr2 (281-327)||(24011042-24011088)
chr2 (281-327)||(34006998-34007044)
chr2 (276-333)||(11308006-11308062)
chr2 (280-332)||(18570973-18571025)
chr2 (280-327)||(23406874-23406921)
chr2 (281-316)||(30394474-30394509)
chr2 (302-333)||(30563409-30563440)
chr2 (288-338)||(22084999-22085049)
[»] chr1 (10 HSPs)
chr1 (277-333)||(40747776-40747832)
chr1 (282-333)||(42004955-42005006)
chr1 (276-332)||(6936402-6936458)
chr1 (276-335)||(21145464-21145524)
chr1 (276-332)||(22794080-22794136)
chr1 (281-347)||(36878447-36878513)
chr1 (280-345)||(30847726-30847791)
chr1 (281-333)||(11412775-11412827)
chr1 (291-343)||(28674790-28674842)
chr1 (296-332)||(42325561-42325597)
[»] chr7 (19 HSPs)
chr7 (282-333)||(23930219-23930270)
chr7 (277-333)||(25239706-25239762)
chr7 (276-348)||(43249978-43250050)
chr7 (281-348)||(4017801-4017868)
chr7 (283-333)||(7133287-7133337)
chr7 (276-333)||(23751900-23751957)
chr7 (281-334)||(38134413-38134466)
chr7 (281-338)||(38804562-38804619)
chr7 (281-333)||(2525851-2525903)
chr7 (281-333)||(13427576-13427628)
chr7 (276-348)||(17780086-17780158)
chr7 (285-333)||(41229309-41229357)
chr7 (281-332)||(18233605-18233656)
chr7 (282-328)||(5938477-5938523)
chr7 (276-326)||(29812666-29812716)
chr7 (281-330)||(22683762-22683811)
chr7 (289-334)||(35238199-35238244)
chr7 (276-332)||(12278836-12278892)
chr7 (291-351)||(32308102-32308162)
[»] chr3 (15 HSPs)
chr3 (247-333)||(52369775-52369861)
chr3 (276-332)||(12704659-12704715)
chr3 (276-348)||(24205043-24205115)
chr3 (276-326)||(3730167-3730217)
chr3 (276-338)||(15864828-15864890)
chr3 (281-327)||(20691325-20691371)
chr3 (285-338)||(25074784-25074837)
chr3 (281-325)||(1830351-1830395)
chr3 (296-344)||(16789672-16789720)
chr3 (268-332)||(25652025-25652089)
chr3 (281-333)||(34189427-34189479)
chr3 (275-326)||(25892467-25892518)
chr3 (289-327)||(21149073-21149111)
chr3 (276-332)||(21211289-21211345)
chr3 (276-328)||(25365467-25365519)
[»] scaffold0598 (1 HSPs)
scaffold0598 (284-348)||(8063-8127)
[»] scaffold0199 (1 HSPs)
scaffold0199 (276-333)||(1949-2006)
[»] scaffold0168 (1 HSPs)
scaffold0168 (281-369)||(21006-21095)
[»] scaffold0007 (1 HSPs)
scaffold0007 (302-348)||(225296-225342)


Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 18287791 - 18288148
Alignment:
Q  1 tttttgttttggtatcaataatatttatttatgtctgaattagtccttacatatagtcatgtgttataaacaaaagttaatttagtccacatttttaggg 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18287791 tttttgttttggtatcgataatatttatttatgtctgaattagtccttacatatagtcatgtgttataaacaaaagttaatttagtccacatttttaggg 18287890  T
Q  101 attaaaactaacatcaacaaatatcacaaagactcagattaaaacaaaaagcaattctgcatgcatcttagagactgcctttacatttcatttgtattaa 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||             |||||||| |||||||||||||||||||||| |    
T  18287891 attaaaactaacatcaacaaatatcacaaagactcaaattaaaacaaaaagcaa-------------ttagagaccgcctttacatttcatttgtattga 18287977  T
Q  201 tcaacgaagtacaaacattctttggattaggtgtatcgcggtttcagacacgcgtcgatgtttgataccaacattgacatgacacctatgattatactga 300  Q
    ||||| ||||||| ||||||||  |||||||||| ||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18287978 tcaacaaagtacagacattcttcagattaggtgtgtcgcgattttggacacgcgtcgatgtttgataccaacattgacatgacacctatgattatactga 18288077  T
Q  301 gttatgtcattttctcaaattattatccgtgtcagcgtctcggtgtccatgcgtgtctgatgtctgtgtct 371  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||    
T  18288078 gttaagtcattttctcaaattattatccgtgtcagcgtctcggtgtctgtgcgtgtctggtgtctgtgtct 18288148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 271 - 325
Target Start/End: Complemental strand, 31264500 - 31264446
Alignment:
Q  271 acattgacatgacacctatgattatactgagttatgtcattttctcaaattatta 325  Q
    ||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||    
T  31264500 acattgacacgacacttatgattacactgaattatgtcattttctcaaattatta 31264446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 267 - 347
Target Start/End: Original strand, 18607090 - 18607170
Alignment:
Q  267 accaacattgacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtcagcgtctcggtgtc 347  Q
    |||||||  |||| |||||||||||||| | ||| |||||| |||||||||||||||||||| |||| | || ||||||||    
T  18607090 accaacacagacacgacacctatgattacattgaattatgttattttctcaaattattatccatgtcggtgtatcggtgtc 18607170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 338
Target Start/End: Complemental strand, 4344787 - 4344737
Alignment:
Q  288 atgattatactgagttatgtcattttctcaaattattatccgtgtcagcgt 338  Q
    ||||||| ||||| |||||||||||| ||||||||||||| ||||||||||    
T  4344787 atgattacactgaattatgtcattttttcaaattattatcggtgtcagcgt 4344737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 338
Target Start/End: Complemental strand, 42469270 - 42469216
Alignment:
Q  284 acctatgattatactgagttatgtcattttctcaaattattatccgtgtcagcgt 338  Q
    ||||||||||| ||| |  ||||||||||||||||||||||||||||||| ||||    
T  42469270 acctatgattacactaaaatatgtcattttctcaaattattatccgtgtcggcgt 42469216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 333
Target Start/End: Original strand, 37472591 - 37472656
Alignment:
Q  268 ccaacattgacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    ||||||| |||| ||||| ||||||||||  || ||||||||||||||| |||||||||| |||||    
T  37472591 ccaacatcgacacgacacatatgattatatcgaattatgtcattttctcgaattattatcagtgtc 37472656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 333
Target Start/End: Complemental strand, 43554578 - 43554521
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    |||| |||||||||||||| ||| | |||| |||||||||||||||||||| ||||||    
T  43554578 gacacgacacctatgattacactaaattatatcattttctcaaattattatacgtgtc 43554521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 333
Target Start/End: Original strand, 2577193 - 2577239
Alignment:
Q  287 tatgattatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    |||||||| ||| | |||||||||||||||||||||||||| |||||    
T  2577193 tatgattacactaaattatgtcattttctcaaattattatcggtgtc 2577239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 333
Target Start/End: Complemental strand, 18162097 - 18162055
Alignment:
Q  291 attatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    |||| ||||| |||||||||||||| |||||||||||||||||    
T  18162097 attacactgaattatgtcattttcttaaattattatccgtgtc 18162055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 319
Target Start/End: Original strand, 26205767 - 26205805
Alignment:
Q  281 gacacctatgattatactgagttatgtcattttctcaaa 319  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  26205767 gacacctatgattacactgaattatgtcattttctcaaa 26205805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 335
Target Start/End: Original strand, 6471897 - 6471950
Alignment:
Q  282 acacctatgattatactgagttatgtcattttctcaaattattatccgtgtcag 335  Q
    |||| ||| |||| ||||| |||||| ||||||||||||||||| |||||||||    
T  6471897 acacatataattacactgaattatgtgattttctcaaattattagccgtgtcag 6471950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 338
Target Start/End: Original strand, 28588681 - 28588738
Alignment:
Q  281 gacacctatgattatactgagttatgtcattttctcaaattattatccgtgtcagcgt 338  Q
    ||||||||| |||| ||||| |||||| ||||||||||||||||| | ||||| ||||    
T  28588681 gacacctataattacactgaattatgtgattttctcaaattattaccggtgtcggcgt 28588738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 333
Target Start/End: Original strand, 39696001 - 39696058
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    |||| |||||||||||||| ||| | |||| |||||||||||||||||| || |||||    
T  39696001 gacacgacacctatgattacactaaattatatcattttctcaaattattgtcggtgtc 39696058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 332
Target Start/End: Original strand, 7997168 - 7997224
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgt 332  Q
    |||| ||||| ||| |||| ||||  |||| ||||||||||||||||||||||||||    
T  7997168 gacacgacacttataattacactgtattatatcattttctcaaattattatccgtgt 7997224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 335
Target Start/End: Original strand, 21577117 - 21577169
Alignment:
Q  283 cacctatgattatactgagttatgtcattttctcaaattattatccgtgtcag 335  Q
    ||||||| |||| ||| | |||||| ||||||||||||||||||| |||||||    
T  21577117 cacctattattacacttaattatgttattttctcaaattattatcggtgtcag 21577169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 276 - 335
Target Start/End: Complemental strand, 34446622 - 34446563
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtcag 335  Q
    |||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  34446622 gacacgacacctatgattacactgaattatgtcattttctcaaattattatccgtgtcag 34446563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 12235521 - 12235579
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtca 334  Q
    |||| |||||||||||||| ||||| ||||||||||||||| |||||||||||||||||    
T  12235521 gacacgacacctatgattacactgaattatgtcattttctctaattattatccgtgtca 12235579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 276 - 333
Target Start/End: Original strand, 12086347 - 12086404
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    |||| |||||||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  12086347 gacacgacacctatgattaaactgaattatgtcattatctcaaattattatccgtgtc 12086404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 370
Target Start/End: Complemental strand, 6389800 - 6389705
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtcagcgtctcggtgtccatg-cgtgtctgatgtctgtgtc 370  Q
    |||| |||||||||||||| ||| | |||| ||||||||||||||||||||||||||| |||| |  |||||| || |||||| | ||||||||||    
T  6389800 gacacgacacctatgattacactaaattatatcattttctcaaattattatccgtgtcggcgtgtgagtgtccgtgtcgtgtccggtgtctgtgtc 6389705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 371
Target Start/End: Complemental strand, 7625170 - 7625083
Alignment:
Q  285 cctatgattatactgagttatgtcattttctcaaattattatccgtgtcagcgtctcggtgtccatg-cgtgtctgatgtctgtgtct 371  Q
    ||||| |||||||| | |||| |||||||||||||||||||||||||||  ||| ||||||||  || |||||| |||||| ||||||    
T  7625170 cctataattatactaaattatatcattttctcaaattattatccgtgtcgacgtgtcggtgtctgtgtcgtgtccgatgtccgtgtct 7625083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 335
Target Start/End: Original strand, 30781296 - 30781355
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtcag 335  Q
    ||||||||||||||||||| | | | ||||||||||||||||||||||||  ||||||||    
T  30781296 gacatgacacctatgattacaattaattatgtcattttctcaaattattacacgtgtcag 30781355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 19602191 - 19602239
Alignment:
Q  284 acctatgattatactgagttatgtcattttctcaaattattatccgtgt 332  Q
    ||||||||||| ||||| |||| ||||||||||||||||||||| ||||    
T  19602191 acctatgattacactgaattatatcattttctcaaattattatcagtgt 19602239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 348
Target Start/End: Complemental strand, 6299564 - 6299497
Alignment:
Q  281 gacacctatgattatactgagttatgtcattttctcaaattattatccgtgtcagcgtctcggtgtcc 348  Q
    ||||||||| |||| | ||| |||| |||||||||||||||||||||| |||| |||| | |||||||    
T  6299564 gacacctatcattacattgaattatatcattttctcaaattattatccatgtcggcgtgttggtgtcc 6299497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 348
Target Start/End: Complemental strand, 6306374 - 6306307
Alignment:
Q  281 gacacctatgattatactgagttatgtcattttctcaaattattatccgtgtcagcgtctcggtgtcc 348  Q
    ||||||||| |||| | ||| |||| |||||||||||||||||||||| |||| |||| | |||||||    
T  6306374 gacacctatcattacattgaattatatcattttctcaaattattatccatgtcggcgtgttggtgtcc 6306307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 332
Target Start/End: Original strand, 7569176 - 7569226
Alignment:
Q  282 acacctatgattatactgagttatgtcattttctcaaattattatccgtgt 332  Q
    |||||||| |||| ||||| |||||| ||||||||||||||||||| ||||    
T  7569176 acacctataattacactgaattatgtaattttctcaaattattatctgtgt 7569226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 330
Target Start/End: Complemental strand, 26247475 - 26247429
Alignment:
Q  284 acctatgattatactgagttatgtcattttctcaaattattatccgt 330  Q
    ||||||||||||||| |  ||||||||||||| ||||||||||||||    
T  26247475 acctatgattatactaaaatatgtcattttcttaaattattatccgt 26247429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 335
Target Start/End: Complemental strand, 21385202 - 21385169
Alignment:
Q  302 ttatgtcattttctcaaattattatccgtgtcag 335  Q
    ||||||||||||||||||||||||| ||||||||    
T  21385202 ttatgtcattttctcaaattattattcgtgtcag 21385169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 348
Target Start/End: Original strand, 13211295 - 13211355
Alignment:
Q  288 atgattatactgagttatgtcattttctcaaattattatccgtgtcagcgtctcggtgtcc 348  Q
    ||||||||| | | ||||||||||||||||||||||||||  ||||  ||| |||||||||    
T  13211295 atgattatattaaattatgtcattttctcaaattattatcaatgtcgacgtgtcggtgtcc 13211355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 332
Target Start/End: Original strand, 17168465 - 17168521
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgt 332  Q
    |||| ||||||||| |||| ||| | |||| ||||||||||||||||||||| ||||    
T  17168465 gacacgacacctattattacactaaattatatcattttctcaaattattatcagtgt 17168521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 28715337 - 28715293
Alignment:
Q  291 attatactgagttatgtcattttctcaaattattatccgtgtcag 335  Q
    |||| ||||| |||||||||||| ||||||||||| |||||||||    
T  28715337 attacactgaattatgtcattttttcaaattattagccgtgtcag 28715293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 20743286 - 20743342
Alignment:
Q  282 acacctatgattatactgagttatgtcattttctcaaattattatccgtgtcagcgt 338  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||    
T  20743286 acacctatgattacactgaattatgtcattttctcaaattattatccgtgtcggcgt 20743342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 267 - 326
Target Start/End: Original strand, 31243541 - 31243600
Alignment:
Q  267 accaacattgacatgacacctatgattatactgagttatgtcattttctcaaattattat 326  Q
    |||||||  ||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  31243541 accaacaccgacatgacacctatgattacactgaattatgtcattttctcaaattattat 31243600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 284 - 348
Target Start/End: Complemental strand, 7012115 - 7012051
Alignment:
Q  284 acctatgattatactgagttatgtcattttctcaaattattatccgtgtcagcgtctcggtgtcc 348  Q
    ||||||||| | ||||| |||||||||||||||||||||||||| ||||| |||| |||||||||    
T  7012115 acctatgatcacactgaattatgtcattttctcaaattattatcggtgtcggcgtgtcggtgtcc 7012051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 276 - 348
Target Start/End: Complemental strand, 24343564 - 24343492
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtcagcgtctcggtgtcc 348  Q
    |||| ||||||||| |||| ||||| |||||| ||||||||||||||||||||||||| |||| |||| ||||    
T  24343564 gacacgacacctataattacactgaattatgtaattttctcaaattattatccgtgtcggcgtgtcggcgtcc 24343492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 333
Target Start/End: Complemental strand, 32910608 - 32910551
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    ||||| ||||| || |||| ||||| ||||||||||||||||||||||||||||||||    
T  32910608 gacataacacccataattacactgaattatgtcattttctcaaattattatccgtgtc 32910551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 34515877 - 34515933
Alignment:
Q  277 acatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    |||||||||||||| ||| ||||| ||||||||||||||  ||||||||||||||||    
T  34515877 acatgacacctatgtttacactgaattatgtcattttcttgaattattatccgtgtc 34515933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 333
Target Start/End: Original strand, 18513247 - 18513300
Alignment:
Q  280 tgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    |||||| |||||||| | ||| |||||||||||||||||||||||||| |||||    
T  18513247 tgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 18513300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 332
Target Start/End: Original strand, 3144654 - 3144710
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgt 332  Q
    |||| |||||||||||||| ||| | |||| ||||||||| ||||||||||||||||    
T  3144654 gacacgacacctatgattacactaaattatatcattttctgaaattattatccgtgt 3144710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 7727966 - 7728018
Alignment:
Q  281 gacacctatgattatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    ||||||||| |||||||||| | ||||||||||||||| |||||||| |||||    
T  7727966 gacacctataattatactgaatcatgtcattttctcaacttattatcggtgtc 7728018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 14465301 - 14465353
Alignment:
Q  281 gacacctatgattatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    ||||| |||||||| | ||| |||||||||||||||||||||||||| |||||    
T  14465301 gacacatatgattaaattgaattatgtcattttctcaaattattatcggtgtc 14465353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 333
Target Start/End: Original strand, 5654599 - 5654650
Alignment:
Q  282 acacctatgattatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    |||| |||||||| | ||| |||||||||||||||||||||||||| |||||    
T  5654599 acacgtatgattacattgaattatgtcattttctcaaattattatcagtgtc 5654650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 333
Target Start/End: Original strand, 43299984 - 43300030
Alignment:
Q  287 tatgattatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    |||||||| | ||| |||||| |||||||||||||||||||||||||    
T  43299984 tatgattacattgaattatgtaattttctcaaattattatccgtgtc 43300030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 333
Target Start/End: Complemental strand, 43300662 - 43300616
Alignment:
Q  287 tatgattatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    |||||||| | ||| |||||| |||||||||||||||||||||||||    
T  43300662 tatgattacattgaattatgtaattttctcaaattattatccgtgtc 43300616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 10546194 - 10546154
Alignment:
Q  287 tatgattatactgagttatgtcattttctcaaattattatc 327  Q
    |||||||| | ||| ||||||||||||||||||||||||||    
T  10546194 tatgattacattgaattatgtcattttctcaaattattatc 10546154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 30068037 - 30068087
Alignment:
Q  283 cacctatgattatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  30068037 cacctacgattatactgaattatgtcattttctcaaattattatccgtgtc 30068087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 347
Target Start/End: Complemental strand, 39820486 - 39820415
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtcagcgtctcggtgtc 347  Q
    |||| |||||||||||||| ||| | |||| |||||||||||||||||||| || |||||||| ||||||||    
T  39820486 gacacgacacctatgattacactaaattatatcattttctcaaattattatacgggtcagcgtgtcggtgtc 39820415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 331
Target Start/End: Original strand, 28883880 - 28883935
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtg 331  Q
    |||| |||||||||||||  ||||| ||||||||||||||||||||||||| ||||    
T  28883880 gacaagacacctatgattccactgaattatgtcattttctcaaattattattcgtg 28883935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 347
Target Start/End: Complemental strand, 44067573 - 44067502
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtcagcgtctcggtgtc 347  Q
    |||| ||||| ||| |||| ||||  |||||||||||||||||||||||||||||||| |||| || |||||    
T  44067573 gacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtc 44067502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 330
Target Start/End: Original strand, 35431142 - 35431196
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgt 330  Q
    |||| |||||||||||||| ||| |  ||||||||||||||||||||||||||||    
T  35431142 gacacgacacctatgattacactaaaatatgtcattttctcaaattattatccgt 35431196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 333
Target Start/End: Complemental strand, 1676769 - 1676712
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    |||| |||||||||||||| ||| |  |||||||||||| ||||||||||||||||||    
T  1676769 gacacgacacctatgattacactaaaatatgtcattttcacaaattattatccgtgtc 1676712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 332
Target Start/End: Original strand, 16869722 - 16869773
Alignment:
Q  281 gacacctatgattatactgagttatgtcattttctcaaattattatccgtgt 332  Q
    |||||| ||||||||| ||| |||||||||||||| |||||||| |||||||    
T  16869722 gacaccaatgattatagtgaattatgtcattttcttaaattattttccgtgt 16869773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 326
Target Start/End: Complemental strand, 40064008 - 40063958
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattat 326  Q
    |||| ||| |||||||||| | ||| |||||||||||||||||||||||||    
T  40064008 gacacgacgcctatgattacaatgaattatgtcattttctcaaattattat 40063958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 325
Target Start/End: Complemental strand, 3025604 - 3025559
Alignment:
Q  280 tgacacctatgattatactgagttatgtcattttctcaaattatta 325  Q
    |||||||||| |||| ||||| |||||| |||||||||||||||||    
T  3025604 tgacacctataattacactgaattatgtgattttctcaaattatta 3025559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 350
Target Start/End: Complemental strand, 3658199 - 3658130
Alignment:
Q  281 gacacctatgattatactgagttatgtcattttctcaaattattatccgtgtcagcgtctcggtgtccat 350  Q
    |||||||||||||| |||||  ||  | |||||||||||||||||||||||||   || |||||||||||    
T  3658199 gacacctatgattacactgaactacattattttctcaaattattatccgtgtcgatgtgtcggtgtccat 3658130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 348
Target Start/End: Complemental strand, 14679371 - 14679319
Alignment:
Q  296 actgagttatgtcattttctcaaattattatccgtgtcagcgtctcggtgtcc 348  Q
    |||||||||| | ||||||| ||||||||||| ||||||| || |||||||||    
T  14679371 actgagttatattattttcttaaattattatctgtgtcagtgtgtcggtgtcc 14679319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 347
Target Start/End: Complemental strand, 22850406 - 22850330
Alignment:
Q  271 acattgacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtcagcgtctcggtgtc 347  Q
    |||||||||||| |||||| |||| | | | ||||||| |||||||||||||| ||| |||| || || ||||||||    
T  22850406 acattgacatgaaacctataattacatttaattatgtctttttctcaaattatcatcggtgttagtgtgtcggtgtc 22850330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 282 - 347
Target Start/End: Complemental strand, 12748735 - 12748670
Alignment:
Q  282 acacctatgattatactgagttatgtcattttctcaaattattatccgtgtcagcgtctcggtgtc 347  Q
    ||||||||||||| |||||  |||||||||||||||||||||||||| ||||||||| || |||||    
T  12748735 acacctatgattacactgaactatgtcattttctcaaattattatccatgtcagcgtgtccgtgtc 12748670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 276 - 348
Target Start/End: Original strand, 23354654 - 23354726
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtcagcgtctcggtgtcc 348  Q
    |||| |||||||||||||| ||| | |||| ||||||||||||||||||||| |||||||| | |||||||||    
T  23354654 gacacgacacctatgattacactaaattatatcattttctcaaattattatctgtgtcagcatgtcggtgtcc 23354726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 276 - 348
Target Start/End: Original strand, 23354997 - 23355069
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtcagcgtctcggtgtcc 348  Q
    ||||||||||||||||||  ||| | |||| ||||||||||||||||||||| |||||||| | |||||||||    
T  23354997 gacatgacacctatgattgcactaaattatatcattttctcaaattattatctgtgtcagcatgtcggtgtcc 23355069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 281 - 338
Target Start/End: Original strand, 10535766 - 10535823
Alignment:
Q  281 gacacctatgattatactgagttatgtcattttctcaaattattatccgtgtcagcgt 338  Q
    ||||| |||||||| ||||| |||||||||||||||||||||||||| ||||| ||||    
T  10535766 gacacttatgattacactgaattatgtcattttctcaaattattatcggtgtcggcgt 10535823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 333
Target Start/End: Complemental strand, 25544538 - 25544481
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    |||| |||||||||||||| ||||| |||| |||||||||||||||||||| ||||||    
T  25544538 gacacgacacctatgattacactgaattatatcattttctcaaattattatacgtgtc 25544481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 327
Target Start/End: Complemental strand, 24011088 - 24011042
Alignment:
Q  281 gacacctatgattatactgagttatgtcattttctcaaattattatc 327  Q
    |||||||||||||| ||| | ||||||||||||||||||||||||||    
T  24011088 gacacctatgattacactaaattatgtcattttctcaaattattatc 24011042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 327
Target Start/End: Original strand, 34006998 - 34007044
Alignment:
Q  281 gacacctatgattatactgagttatgtcattttctcaaattattatc 327  Q
    |||||||||||||| ||||| |||||||| |||||||||||||||||    
T  34006998 gacacctatgattacactgaattatgtcaatttctcaaattattatc 34007044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 333
Target Start/End: Original strand, 11308006 - 11308062
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    |||| |||||||||||||| ||||| |||||||||||| |||||||| ||||||||||    
T  11308006 gacacgacacctatgattacactgaattatgtcattttttcaaatta-tatccgtgtc 11308062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 332
Target Start/End: Complemental strand, 18571025 - 18570973
Alignment:
Q  280 tgacacctatgattatactgagttatgtcattttctcaaattattatccgtgt 332  Q
    |||||| |||||||| | ||| |||||||||||||||||||||||||| ||||    
T  18571025 tgacacatatgattacattgaattatgtcattttctcaaattattatcggtgt 18570973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 327
Target Start/End: Complemental strand, 23406921 - 23406874
Alignment:
Q  280 tgacacctatgattatactgagttatgtcattttctcaaattattatc 327  Q
    |||||||||||||||| |||| |||||| ||||||| |||||||||||    
T  23406921 tgacacctatgattattctgaattatgtaattttcttaaattattatc 23406874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 316
Target Start/End: Complemental strand, 30394509 - 30394474
Alignment:
Q  281 gacacctatgattatactgagttatgtcattttctc 316  Q
    |||||||||||||||||||| |||||||||||||||    
T  30394509 gacacctatgattatactgaattatgtcattttctc 30394474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 333
Target Start/End: Complemental strand, 30563440 - 30563409
Alignment:
Q  302 ttatgtcattttctcaaattattatccgtgtc 333  Q
    ||||||||||||||||||||||||||||||||    
T  30563440 ttatgtcattttctcaaattattatccgtgtc 30563409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 338
Target Start/End: Complemental strand, 22085049 - 22084999
Alignment:
Q  288 atgattatactgagttatgtcattttctcaaattattatccgtgtcagcgt 338  Q
    ||||||| ||| | |||||||||||||| |||||||||| |||||||||||    
T  22085049 atgattacactaaattatgtcattttcttaaattattatacgtgtcagcgt 22084999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 40747776 - 40747832
Alignment:
Q  277 acatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    ||||||||||||| |||| | ||| ||||||||||||||||||||||||||||||||    
T  40747776 acatgacacctataattacattgaattatgtcattttctcaaattattatccgtgtc 40747832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 333
Target Start/End: Original strand, 42004955 - 42005006
Alignment:
Q  282 acacctatgattatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    ||||||||||||| ||| | ||||||||||||||||||||||||||||||||    
T  42004955 acacctatgattacactaaattatgtcattttctcaaattattatccgtgtc 42005006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 276 - 332
Target Start/End: Original strand, 6936402 - 6936458
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgt 332  Q
    |||| |||||||||||||| ||| | |||||||||||||||| ||||||||||||||    
T  6936402 gacacgacacctatgattacacttaattatgtcattttctcagattattatccgtgt 6936458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 335
Target Start/End: Complemental strand, 21145524 - 21145464
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttct-caaattattatccgtgtcag 335  Q
    |||| ||| |||||||||| ||||| |||||||||||| | ||||||||||||||||||||    
T  21145524 gacacgacgcctatgattacactgaattatgtcatttttttcaaattattatccgtgtcag 21145464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 332
Target Start/End: Original strand, 22794080 - 22794136
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgt 332  Q
    |||| ||||||||| |||| ||||  |||||||||||| ||||||||||||||||||    
T  22794080 gacacgacacctataattacactgtattatgtcattttttcaaattattatccgtgt 22794136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 347
Target Start/End: Complemental strand, 36878513 - 36878447
Alignment:
Q  281 gacacctatgattatactgagttatgtcattttctcaaattattatccgtgtcagcgtctcggtgtc 347  Q
    ||||||||| |||| ||||| |||||| ||||||||||||||||| | ||||| |||| || |||||    
T  36878513 gacacctataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 36878447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 345
Target Start/End: Original strand, 30847726 - 30847791
Alignment:
Q  280 tgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtcagcgtctcggtg 345  Q
    |||||| |||||||| | ||| |||||||||||| ||||||||||| | |||||||| | ||||||    
T  30847726 tgacacatatgattacattgaattatgtcattttttcaaattattagcagtgtcagcatgtcggtg 30847791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 11412775 - 11412827
Alignment:
Q  281 gacacctatgattatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    |||||||||||| | | ||| |||||||||||||||| ||||||||| |||||    
T  11412775 gacacctatgatcacattgaattatgtcattttctcatattattatcggtgtc 11412827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 343
Target Start/End: Complemental strand, 28674842 - 28674790
Alignment:
Q  291 attatactgagttatgtcattttctcaaattattatccgtgtcagcgtctcgg 343  Q
    |||||||||| |||||| ||||||||||||||||| | |||| ||||| ||||    
T  28674842 attatactgaattatgtaattttctcaaattattaacggtgttagcgtgtcgg 28674790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 42325597 - 42325561
Alignment:
Q  296 actgagttatgtcattttctcaaattattatccgtgt 332  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  42325597 actgaattatgtcattttctcaaattattatcggtgt 42325561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 333
Target Start/End: Complemental strand, 23930270 - 23930219
Alignment:
Q  282 acacctatgattatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    ||||||||||||| ||||| ||||||||||||||||||||| ||||||||||    
T  23930270 acacctatgattacactgaattatgtcattttctcaaattactatccgtgtc 23930219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 25239706 - 25239762
Alignment:
Q  277 acatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    ||||||||||||| |||| ||||||||||   |||||||||||||||||||||||||    
T  25239706 acatgacacctataattacactgagttataaaattttctcaaattattatccgtgtc 25239762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 276 - 348
Target Start/End: Complemental strand, 43250050 - 43249978
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtcagcgtctcggtgtcc 348  Q
    |||| ||||| ||| |||| ||||  |||||||||||||||||||||||||||||||| |||| || ||||||    
T  43250050 gacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtcc 43249978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 348
Target Start/End: Original strand, 4017801 - 4017868
Alignment:
Q  281 gacacctatgattatactgagttatgtcattttctcaaattattatccgtgtcagcgtctcggtgtcc 348  Q
    ||||| |||||||| ||| | |||| || |||||||||||||||||||||||| |||| |||||||||    
T  4017801 gacacttatgattacactaaattatatcgttttctcaaattattatccgtgtcggcgtgtcggtgtcc 4017868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 7133287 - 7133337
Alignment:
Q  283 cacctatgattatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    |||||||||||| ||||| |||||||||||||||||||||| ||| |||||    
T  7133287 cacctatgattacactgaattatgtcattttctcaaattatcatctgtgtc 7133337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 333
Target Start/End: Complemental strand, 23751957 - 23751900
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    |||| |||||||||||||| ||| | |||| ||||||| |||||||||||||||||||    
T  23751957 gacacgacacctatgattacactaaattatatcattttatcaaattattatccgtgtc 23751900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 334
Target Start/End: Original strand, 38134413 - 38134466
Alignment:
Q  281 gacacctatgattatactgagttatgtcattttctcaaattattatccgtgtca 334  Q
    ||||| |||||||| | ||| |||||||||||||||||||||||||| ||||||    
T  38134413 gacacatatgattacattgaattatgtcattttctcaaattattatcggtgtca 38134466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 338
Target Start/End: Original strand, 38804562 - 38804619
Alignment:
Q  281 gacacctatgattatactgagttatgtcattttctcaaattattatccgtgtcagcgt 338  Q
    ||||||||||||||  |||  |||||||||||||| ||||||||||||||||| ||||    
T  38804562 gacacctatgattaccctggattatgtcattttctgaaattattatccgtgtcggcgt 38804619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 2525851 - 2525903
Alignment:
Q  281 gacacctatgattatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    ||||| |||||||||| ||| ||||||||||| |||||||||||||| |||||    
T  2525851 gacacatatgattatattgaattatgtcatttgctcaaattattatcggtgtc 2525903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 13427628 - 13427576
Alignment:
Q  281 gacacctatgattatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    |||| ||||||||||||| | |||||||||||| |||||||||| ||||||||    
T  13427628 gacatctatgattatactaaattatgtcattttttcaaattattttccgtgtc 13427576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 348
Target Start/End: Original strand, 17780086 - 17780158
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtcagcgtctcggtgtcc 348  Q
    |||| ||||||||| |||| |  || |||||||||||||| |||||||||||| ||||||| | |||||||||    
T  17780086 gacacgacacctattattacatagaattatgtcattttcttaaattattatccatgtcagcatgtcggtgtcc 17780158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 333
Target Start/End: Original strand, 41229309 - 41229357
Alignment:
Q  285 cctatgattatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    ||||||||||||| || ||||||||||||||||||||||| || |||||    
T  41229309 cctatgattatacagaattatgtcattttctcaaattattgtcggtgtc 41229357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 332
Target Start/End: Original strand, 18233605 - 18233656
Alignment:
Q  281 gacacctatgattatactgagttatgtcattttctcaaattattatccgtgt 332  Q
    ||||||||| |||| ||||| ||||||||||||||||||||| |||| ||||    
T  18233605 gacacctataattacactgaattatgtcattttctcaaattactatctgtgt 18233656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 328
Target Start/End: Complemental strand, 5938523 - 5938477
Alignment:
Q  282 acacctatgattatactgagttatgtcattttctcaaattattatcc 328  Q
    |||||||| |||||||||| |||||| ||||| ||||||||||||||    
T  5938523 acacctataattatactgaattatgttattttatcaaattattatcc 5938477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 326
Target Start/End: Original strand, 29812666 - 29812716
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattat 326  Q
    |||| |||||||||||||| ||| | |||| ||||||||||||||||||||    
T  29812666 gacacgacacctatgattacactaaattatatcattttctcaaattattat 29812716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 330
Target Start/End: Original strand, 22683762 - 22683811
Alignment:
Q  281 gacacctatgattatactgagttatgtcattttctcaaattattatccgt 330  Q
    |||||||||||||  ||||| |||| |||| |||||||||||||||||||    
T  22683762 gacacctatgattgcactgaattatatcatattctcaaattattatccgt 22683811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 334
Target Start/End: Original strand, 35238199 - 35238244
Alignment:
Q  289 tgattatactgagttatgtcattttctcaaattattatccgtgtca 334  Q
    |||||||| ||| |||||||||||||||||| ||||||| ||||||    
T  35238199 tgattatattgaattatgtcattttctcaaaatattatcggtgtca 35238244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 12278892 - 12278836
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgt 332  Q
    |||| ||||| ||| |||| ||||| |||||||||||||| ||||||||||| ||||    
T  12278892 gacacgacacatataattacactgaattatgtcattttcttaaattattatcagtgt 12278836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 351
Target Start/End: Complemental strand, 32308162 - 32308102
Alignment:
Q  291 attatactgagttatgtcattttctcaaattattatccgtgtcagcgtctcggtgtccatg 351  Q
    |||| ||||| |||||| ||||||||||||||||| | ||||| |||| || |||||||||    
T  32308162 attacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtccatg 32308102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 247 - 333
Target Start/End: Complemental strand, 52369861 - 52369775
Alignment:
Q  247 gacacgcgtcgatgtttgataccaacattgacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    ||||||||||| |||  |||||| |||  |||| |||||||||||||| | ||| |||||| |||||||||||||||||||| ||||    
T  52369861 gacacgcgtcggtgtccgataccgacaccgacacgacacctatgattacattgaattatgtaattttctcaaattattatccatgtc 52369775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 276 - 332
Target Start/End: Original strand, 12704659 - 12704715
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgt 332  Q
    |||| |||||||||||||| | ||| |||||||||||| ||||||||||||||||||    
T  12704659 gacacgacacctatgattacattgaattatgtcattttttcaaattattatccgtgt 12704715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 276 - 348
Target Start/End: Original strand, 24205043 - 24205115
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtcagcgtctcggtgtcc 348  Q
    |||| ||||| ||| |||| ||||  |||||||||||||||||||||||||||||||| |||| || ||||||    
T  24205043 gacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtcc 24205115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 326
Target Start/End: Original strand, 3730167 - 3730217
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattat 326  Q
    |||| |||||||||||||| ||||| |||||||||| ||||||||||||||    
T  3730167 gacacgacacctatgattacactgaattatgtcattatctcaaattattat 3730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 338
Target Start/End: Complemental strand, 15864890 - 15864828
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtcagcgt 338  Q
    |||| |||||||||||||| ||| | |||| ||||||| ||||||||||||||||||| ||||    
T  15864890 gacacgacacctatgattacactaaattatatcattttttcaaattattatccgtgtcggcgt 15864828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 327
Target Start/End: Complemental strand, 20691371 - 20691325
Alignment:
Q  281 gacacctatgattatactgagttatgtcattttctcaaattattatc 327  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||||||    
T  20691371 gacacatatgattacactgaattatgtcattttctcaaattattatc 20691325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 25074837 - 25074784
Alignment:
Q  285 cctatgattatactgagttatgtcattttctcaaattattatccgtgtcagcgt 338  Q
    |||||||||| ||| | |||||||||||||||||||||||||| ||||| ||||    
T  25074837 cctatgattacactcaattatgtcattttctcaaattattatcggtgtcggcgt 25074784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 325
Target Start/End: Complemental strand, 1830395 - 1830351
Alignment:
Q  281 gacacctatgattatactgagttatgtcattttctcaaattatta 325  Q
    |||||||||||||| ||||| |||||||||||||| |||||||||    
T  1830395 gacacctatgattacactgaattatgtcattttcttaaattatta 1830351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 16789672 - 16789720
Alignment:
Q  296 actgagttatgtcattttctcaaattattatccgtgtcagcgtctcggt 344  Q
    ||||| |||||||||||||||||||||||||| ||||| || |||||||    
T  16789672 actgaattatgtcattttctcaaattattatctgtgtcggcatctcggt 16789720  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 332
Target Start/End: Original strand, 25652025 - 25652089
Alignment:
Q  268 ccaacattgacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgt 332  Q
    |||||| |||||  |||||||| | || ||||| |||| ||||||||||||||||||||||||||    
T  25652025 ccaacactgacacaacacctataactacactgaattatatcattttctcaaattattatccgtgt 25652089  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 34189479 - 34189427
Alignment:
Q  281 gacacctatgattatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    |||||||| ||||| |||||  ||||||||||||||||||||||||| |||||    
T  34189479 gacacctacgattacactgaaatatgtcattttctcaaattattatctgtgtc 34189427  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 326
Target Start/End: Complemental strand, 25892518 - 25892467
Alignment:
Q  275 tgacatgacacctatgattatactgagttatgtcattttctcaaattattat 326  Q
    ||||| |||||||||||||| ||||| |||| ||||||||| ||||||||||    
T  25892518 tgacacgacacctatgattacactgaattatatcattttcttaaattattat 25892467  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 327
Target Start/End: Complemental strand, 21149111 - 21149073
Alignment:
Q  289 tgattatactgagttatgtcattttctcaaattattatc 327  Q
    |||||| ||||| ||||||||||||||||||||||||||    
T  21149111 tgattacactgaattatgtcattttctcaaattattatc 21149073  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 21211345 - 21211289
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgt 332  Q
    |||| |||||| || |||| |||||  ||||| ||||||||||||||||||||||||    
T  21211345 gacacgacacccataattacactgaactatgtaattttctcaaattattatccgtgt 21211289  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 25365519 - 25365467
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatcc 328  Q
    |||| ||||| |||||||| || || ||||||||| |||||||||||||||||    
T  25365519 gacacgacacttatgattacaccgaattatgtcatattctcaaattattatcc 25365467  T

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Target: scaffold0598 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 284 - 348
Target Start/End: Original strand, 8063 - 8127
Alignment:
Q  284 acctatgattatactgagttatgtcattttctcaaattattatccgtgtcagcgtctcggtgtcc 348  Q
    ||||||| ||| ||||| ||||||||||||||||||||||||||||| ||  ||| |||||||||    
T  8063 acctatgtttacactgaattatgtcattttctcaaattattatccgtatcgacgtgtcggtgtcc 8127  T

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Target: scaffold0199 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 333
Target Start/End: Complemental strand, 2006 - 1949
Alignment:
Q  276 gacatgacacctatgattatactgagttatgtcattttctcaaattattatccgtgtc 333  Q
    |||| |||||||||||||| ||| |  |||||||||||| ||||||||||||||||||    
T  2006 gacacgacacctatgattacactaaaatatgtcattttcacaaattattatccgtgtc 1949  T

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Target: scaffold0168 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 369
Target Start/End: Complemental strand, 21095 - 21006
Alignment:
Q  281 gacacctatgattatactgagttatgtcattttctcaaattattatccgtgtcagcgtctcggtgtccatg-cgtgtctgatgtctgtgt 369  Q
    ||||| ||| ||||||| || |||||| ||||||||||||||||| |||||||||| | || |||||| || |||||||| |||| ||||    
T  21095 gacacatataattataccgacttatgtgattttctcaaattattaaccgtgtcagcatgtcagtgtccgtgtcgtgtctggtgtccgtgt 21006  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 348
Target Start/End: Original strand, 225296 - 225342
Alignment:
Q  302 ttatgtcattttctcaaattattatccgtgtcagcgtctcggtgtcc 348  Q
    |||||||||||||||||||||||||| ||||| |||| || ||||||    
T  225296 ttatgtcattttctcaaattattatctgtgtcggcgtgtcagtgtcc 225342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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