View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9066_low_15 (Length: 329)
Name: NF9066_low_15
Description: NF9066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9066_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 310
Target Start/End: Complemental strand, 25268075 - 25267781
Alignment:
| Q |
16 |
cctgtgtaccttgtaagttacttattctgcctacaaattttgactagaatttggatattaattagtcccggtagaggaattgacttaactgttgctgttc |
115 |
Q |
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| T |
25268075 |
cctgtgtaccttgtaagttacttattctgcctacaaattttgactagaatttgaatattaattagtcccggtagaggaattgacttaactgttgctgttc |
25267976 |
T |
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| Q |
116 |
tttgaatgcagtgggccagaagtcctgggaagactggttctcatttccatcccagcagtgaattgtttcttccaagtgagaaaaaagatattataacttc |
215 |
Q |
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| T |
25267975 |
tttgaatgcagtgggccagaagtcctgggaagactggttctcatttccatcccagcagtgaattgtttcttccaagtgagaaaaaagatattataacttc |
25267876 |
T |
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| Q |
216 |
tacagcttgttggactgctatggtggcattgcttgtagggttgggatttacaattggtccaattccattactcatgctttatggagttccgtatg |
310 |
Q |
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| T |
25267875 |
tacagcttgttggactgctatggtggcattgcttgtagggttgggatttacaatgggtccaattccattactcatgctttatggagttccgtatg |
25267781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 310
Target Start/End: Original strand, 4706177 - 4706315
Alignment:
| Q |
172 |
agtgaattgtttcttccaagtgagaaaaaagatattataacttctacagcttgttggactgctatggtggcattgcttgtagggttgggatttacaattg |
271 |
Q |
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||||| |||||| | |||| ||| | ||||||| |||| ||||| |||| ||||||||| ||||||| || ||||||||||| || |||||| ||| | |
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| T |
4706177 |
agtgacttgtttgtgccaaatgaaagaaaagatgttattacttcgacagtttgttggacagctatggctgctttgcttgtaggcttaggatttgtaatgg |
4706276 |
T |
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| Q |
272 |
gtccaattccattactcatgctttatggagttccgtatg |
310 |
Q |
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| T |
4706277 |
gtccaattcaattactcaagctttacggcgttccttatg |
4706315 |
T |
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