View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9066_low_3 (Length: 490)
Name: NF9066_low_3
Description: NF9066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9066_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 5e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 70 - 283
Target Start/End: Original strand, 36726478 - 36726691
Alignment:
| Q |
70 |
caattgaacgcagtttaaccatctgtttctaagcttccaaggaactaaagaaacatttttgaaggctttgatcaccaattttgaatctacttccagccat |
169 |
Q |
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| T |
36726478 |
caattgaacgcagtttaaccatctgtttctaagcttccaaggaactaaagaaacattttttaaggctttgatcaccaattctgaatctgcttccagccat |
36726577 |
T |
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| Q |
170 |
aaattcgaccattgatgtgagtttgcaatctctattgctctcatggctccagacaactcagcatgcaaggaatttcccaaacatgtattttcaccaaagc |
269 |
Q |
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| T |
36726578 |
aatttcgaccgctgatgtgagtttgcaatctctattggtctcatggctccagacaactcgacatgcaaggagtttcccaaacctgtattttcaccaaagc |
36726677 |
T |
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| Q |
270 |
aaagtagaaaatcc |
283 |
Q |
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| T |
36726678 |
aaagtagaaaatcc |
36726691 |
T |
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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 290 - 360
Target Start/End: Original strand, 22830616 - 22830686
Alignment:
| Q |
290 |
ctatctctgaaaattcctccacaagaggagagattaccatttgtgaatccatctgtattgcatttgatcca |
360 |
Q |
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| T |
22830616 |
ctatctctaaaaattcctccacaaaaggagaggttgccatttgtggatccatcggtgttgcatttgatcca |
22830686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 25276663 - 25276704
Alignment:
| Q |
19 |
tttccaagttgccaactcagtagtgagtagtggccagaaggc |
60 |
Q |
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| T |
25276663 |
tttccaagttgccaactcagtagtgagtagtagccagaaggc |
25276704 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 333
Target Start/End: Complemental strand, 23881498 - 23881422
Alignment:
| Q |
257 |
ttttcaccaaagcaaagtagaaaatccgatttactatctctgaaaattcctccacaagaggagagattaccatttgt |
333 |
Q |
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| T |
23881498 |
ttttctccaaagcaaagcaaaaaatccgaattactatctctgaagattcccccacaggaagattgattactatttgt |
23881422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 354
Target Start/End: Complemental strand, 17688986 - 17688922
Alignment:
| Q |
290 |
ctatctctgaaaattcctccacaagagga-gagattaccatttgtgaatccatctgtattgcattt |
354 |
Q |
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| T |
17688986 |
ctatctctgaaaatccctccacatgaggatgaga-taccatttgtggagccatcagtattgcattt |
17688922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 354
Target Start/End: Complemental strand, 23113741 - 23113677
Alignment:
| Q |
290 |
ctatctctgaaaattcctccacaagagga-gagattaccatttgtgaatccatctgtattgcattt |
354 |
Q |
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| T |
23113741 |
ctatctctgaaaatccctccacatgaggatgaga-taccatttgtggagccatcagtattgcattt |
23113677 |
T |
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