View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9066_low_8 (Length: 396)
Name: NF9066_low_8
Description: NF9066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9066_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 24917344 - 24916965
Alignment:
| Q |
1 |
aaattggtcacaaaagtggtagtgcaagcaataccaatgtcacaaataagcacaatcatgagcataatcatagtactatgacatatttcaagtctgtttt |
100 |
Q |
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| T |
24917344 |
aaattggtcacaaaagtggtagtgcaagcaataccaatgtcacaaataagcacaatcatgagcataatcatagtactatgacatatttcaagtctgtttt |
24917245 |
T |
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| Q |
101 |
caaaagcttttt-acattgataacaaaaacaacctcagaagctgttgcaaatgattcctcaaggaataaagtcagaggagtaacatgtaagtacgatcaa |
199 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24917244 |
caaaagcttttttacattgataacaaaaacaacctcagaagctgttgcaaatgattcctcgaggaataaagtcagaggagtaacatgtaagtacgatcaa |
24917145 |
T |
|
| Q |
200 |
tattttacaatttatttaactatgatgnnnnnnnnggtcaaccctttatatatacttgttttgagattatgaaaaaggaaaacnnnnnnnatttatattt |
299 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24917144 |
tattttacaatttatttaactatgatgttttttttggtcaaccctttatatatacttgttttgagattatgaaaaaggaaaac-ttttttatttatattt |
24917046 |
T |
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| Q |
300 |
gatcatagtcatgtgttttgtaaaataaagattttattggaatttgcagcttcaacagatgtatcatctgatagttctaag |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24917045 |
gatcatagtcatgtgttttgtaaaataaagattttattggaatatgcagcttcaacagatgtatcatctgatagttctaag |
24916965 |
T |
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