View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9067_high_3 (Length: 457)
Name: NF9067_high_3
Description: NF9067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9067_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 11 - 439
Target Start/End: Complemental strand, 7182219 - 7181794
Alignment:
| Q |
11 |
agattattctgcagaaatttgtcaaatgtaaatcaagtccccccttgagattttgagtatttcaggaaaactaaaatattgttgtcccctcataattata |
110 |
Q |
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| T |
7182219 |
agattattctccagaaatgtgtcaaatgtaa-tcaagtcccac-ttgagattttgagtatttcaagaaaactaaaatattgttgtcccctcataattata |
7182122 |
T |
|
| Q |
111 |
tcattagaattattttctagaaactgtggcgaagttttaacnnnnnnntttgggtgtcaaagtgagcataaagaatttacagttgcaaatttttaaaata |
210 |
Q |
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| T |
7182121 |
tcattagaattattttctagaaactgtggcgaagttttaacaaaaaaatttgggtgtcaaagtgagcataaagaatttacagttgcaaatttttaaaata |
7182022 |
T |
|
| Q |
211 |
aaataaagtgcaaattcttgaaattgtaacaacagtagtagggcaacatgaacaaccaatcaaaataacgaaacacgtatcactacacaacaacnnnnnn |
310 |
Q |
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| T |
7182021 |
aaataaagtgcaaattcttgaaattgtaacaacagtagtagggcaacatgaacaaccaatcaaaataacgaaacacatatcactacacaacaac-aaaaa |
7181923 |
T |
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| Q |
311 |
ngtctgaaatatcacaaaaaacaacaccaccagttatttttctcaaaactcatcaagtctcggttctatacgtagctatcaagggaccaattccttgcat |
410 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7181922 |
agtctgaaatatcacaacaaacaacaccaccagttatttttctcaaaactcatcaagtctcggttctatacgtagctatcaagggaccaattccttgcat |
7181823 |
T |
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| Q |
411 |
gcatgaatggactgattaatattgtacct |
439 |
Q |
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| T |
7181822 |
gcatgaatggactgattaatactgtacct |
7181794 |
T |
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