View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9067_high_5 (Length: 405)
Name: NF9067_high_5
Description: NF9067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9067_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 4455881 - 4456010
Alignment:
| Q |
9 |
tggtgttagagtacagtttcgggtgagcaaaaaggttatggatccatttttgaagttgttatattattgtagaaggtaattcttgtgcttcaagaatctt |
108 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4455881 |
tggtgttagagtacagtttctggtgagcaaaaaggttatggatccatttttgaagttgttatattattgtagaaggtaattcttgtgcttcaagaatctt |
4455980 |
T |
|
| Q |
109 |
gttatataaatacttctttttccgttgaat |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
4455981 |
gttatataaatacttctttttccgttgaat |
4456010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 179 - 389
Target Start/End: Original strand, 4456051 - 4456266
Alignment:
| Q |
179 |
caattacacttgcacctaatcttaattaatcacgtccttagattggattcttgaaccacaacaagaaaagnnnnnnnnntgaaatcagccctatttctct |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
4456051 |
caattacacttgcacctaatcttaattaatcacgtccttagattggattcttgaaccacaacaagaaga---aaaaaaatgaaatcagccctatttctct |
4456147 |
T |
|
| Q |
279 |
tgttatgaaatttattgagttatttatga--------catattctctcaaaatttccgtcacttattcnnnnnnnctctctaatgaagattttgcatata |
370 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4456148 |
tgttatgaaatttattgagttatttataaacgaattccatattctctcaaaatttccgtcacttattctttttttctctctaatgaagattttgcatata |
4456247 |
T |
|
| Q |
371 |
aactacaacatgttgaatt |
389 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
4456248 |
aactacaacatgttgaatt |
4456266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University