View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9067_low_1 (Length: 846)
Name: NF9067_low_1
Description: NF9067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9067_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 14 - 501
Target Start/End: Complemental strand, 39616558 - 39616069
Alignment:
| Q |
14 |
tttcgtgttcgggtcgtgggaaaggtatatagctccacaattagaagtggatatatagcccagaagcttaaagttgtcaagcttgtg--agctttatatc |
111 |
Q |
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| T |
39616558 |
tttcatgttcgggtcgtgggaaaggtatatagctccacaattagaagttgatatatagcccagaagcttaaagctgttaagcttgtgtgagctttatatc |
39616459 |
T |
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| Q |
112 |
c-acttaggttcttctacggctcatctatgttttgttttctttcggaattttgtagagtccctgaataacttgtgtatatatgtatgatgttgttgaata |
210 |
Q |
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| T |
39616458 |
ccacttaggttcttctacggctcttctctgttttgttttctttcggaattttgtagagtccctgaataacttgtgtatatatgtatgatgttgttgaata |
39616359 |
T |
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| Q |
211 |
ttgtaatcaaattttgtagctgattttgttacttgcttcatagatattctaaaatggtctttgacaatgcacataattgatcaagtaaagttaaattcgt |
310 |
Q |
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| T |
39616358 |
ttgtaatcaaattttgtagctgattttgttacttgcttcatagatattctaaaatggtctttgacaatgcacaacattgatcaagtaaagttaaatt-gt |
39616260 |
T |
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| Q |
311 |
taacattttagtatactttatgtgtgatgttatgtctcgttgtcacacacataggtgtcttgtcgtcacacacaccgctaaatttgtctctgacttcgca |
410 |
Q |
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| T |
39616259 |
taacattttagtatactttatgtgtgatgttatgtctcgttgtcacacatataggtgtcttgttgtcacacacaccgttaaattcgtctctgacttcgca |
39616160 |
T |
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| Q |
411 |
ttcaaataagttattgatattatgattcaaaaagttatttgattgtgttaaatgtaactcacatttgttcatctaagagtatgttagaaac |
501 |
Q |
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| T |
39616159 |
ttcaaataagttattgatattatgattcaaaaagttatttgattgtgttaaatgtaactcacatttgttcatctaagagtatgttataaac |
39616069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 560 - 700
Target Start/End: Complemental strand, 39616010 - 39615870
Alignment:
| Q |
560 |
gatctaattgattatgagtagttaaatataagaatcagcttgatagtttgatagagttgataactcttcagaaatactcataatctcatagatttatttg |
659 |
Q |
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| T |
39616010 |
gatctaattgattatgagtagttaaatataagaatcagcttgatagtttgatagagttgataactcttttgaaatactcctaatctcatagatttatttg |
39615911 |
T |
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| Q |
660 |
aaaacgctctgtaaaatcataactaatttgataatttactt |
700 |
Q |
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| T |
39615910 |
aaagcgctctataaaatcatagctaatttgataatttactt |
39615870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 736 - 823
Target Start/End: Complemental strand, 39615514 - 39615427
Alignment:
| Q |
736 |
ttttaagtggaagaacctacggtgtctcataacttcataagcacttttttgctacgtgaaacggacgtagtcaaaatggcttttcccc |
823 |
Q |
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| T |
39615514 |
ttttaagtggaagaacctacggtgtcttataacttcataagcacttttttgctacgtgaaacggatgtagtcaaaatggcttttcccc |
39615427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 695 - 739
Target Start/End: Complemental strand, 39615576 - 39615532
Alignment:
| Q |
695 |
ttactttatactattgtgagactcgtatacatgtaatggactttt |
739 |
Q |
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| T |
39615576 |
ttactatatactattgtgagactcgtatatatgtaatggactttt |
39615532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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