View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9067_low_10 (Length: 407)
Name: NF9067_low_10
Description: NF9067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9067_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 14 - 390
Target Start/End: Original strand, 6973305 - 6973679
Alignment:
| Q |
14 |
cagagaaatatgaaaggtaggtgttatattggctttcatattttttactttcatatgtgatgaaatgtctccttgtataagattttgctgtatgnnnnnn |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6973305 |
cagagaaatatgaaaggtaggtgttatattggctttcatattttttactttcatatgtgatgaaatgtctccttgtataagattttgctgtatgtttttt |
6973404 |
T |
|
| Q |
114 |
nccataatcaaaatatcattataagattttttctagttactataatagttaattaacatgattcttttgatatgctttctatccactaattgagtttcac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6973405 |
tccataatcaaaatatcattataagattttttctagttactataataattaattaacatgattcttttgatatgctttctatccactaattgagtttcac |
6973504 |
T |
|
| Q |
214 |
aggataaaaagtcttcactactataatacattttttctagaatattaatgcaggatcgagtattggtatgggttcaaacacactcacaatcatttctcaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6973505 |
aggataaaaagtcttcactactataatacattttttctagaatattaatgcaggatcgagtattggtatgggttcaaacacactcacaatcatttctcaa |
6973604 |
T |
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| Q |
314 |
cactattgttgttaaaagttagaatttaannnnnnnnnnnaataccatttgttggcatcatgtttcaccatttaaaa |
390 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6973605 |
cactattgttgttaaaagttagaatttaa--tttttttttaataccatttgttggcatcatgtttcaccatttaaaa |
6973679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 43608613 - 43608393
Alignment:
| Q |
14 |
cagagaaatatgaaaggtaggtgttatattggctttcatattttttactttcatatgtgatgaaatgtctccttgtataagattttgctgtatgnnnnnn |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43608613 |
cagagaaatatgaaaggtaggtgttatattggctttcatattttttactttcatatgcgatgaaatgtctccttgtataagattttgctgtatgtttttt |
43608514 |
T |
|
| Q |
114 |
nccataatcaaaatatcattataagattttttctagttactataatagttaattaacatgattcttttgatatgctttctatccactaattgagtttcac |
213 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43608513 |
tccataatcaaaatatcattataagattttttctagttactataatagttaattaatatgattcttttgatatgctttctatcctctaattgagtttcac |
43608414 |
T |
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| Q |
214 |
aggataaaaagtcttcactac |
234 |
Q |
| |
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||| ||||||||||||||||| |
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| T |
43608413 |
agggtaaaaagtcttcactac |
43608393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 1078810 - 1079031
Alignment:
| Q |
14 |
cagagaaatatgaaaggtaggtgttatattggctttcatattttttactttcatatgtgatgaaatgtctccttgtataagattttgctgtatgnnnnnn |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||| |
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|
| T |
1078810 |
cagagaaatatgaaaggtaggtgttatattggctttcatattttttactttcatatgcgatgaaatgtctccttgtgtaagattttgttgtatgcttttt |
1078909 |
T |
|
| Q |
114 |
nccataatcaaaatatcattataaga-ttttttctagttactataatagttaattaacatgattcttttgatatgctttctatccactaattgagtttca |
212 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1078910 |
tccataatcaaaatatcattataagatttttttctagttactataatagttaattaatatgattcttttgatatgctttctatcctctaattgagtttca |
1079009 |
T |
|
| Q |
213 |
caggataaaaagtcttcactac |
234 |
Q |
| |
|
|||| ||||||| ||||||||| |
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|
| T |
1079010 |
cagggtaaaaagccttcactac |
1079031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 38 - 230
Target Start/End: Complemental strand, 33767696 - 33767503
Alignment:
| Q |
38 |
tatattggctttcatattttttactttcatatgtgatgaaatgtctccttgtat-aagattttgctgtatgnnnnnnncca-taatcaaaatatcattat |
135 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||| |||||||||||| || |||||||||||||||||| |
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| T |
33767696 |
tatattggctttcatattttg-actttcatatgcaatgaaatgtctccttgtatcaaggttttgctgtatgatttttttcaataatcaaaatatcattat |
33767598 |
T |
|
| Q |
136 |
aagattttttctagttactataatagttaattaacatgattcttttgatatgctttctatccactaattgagtttcacaggataaaaagtcttca |
230 |
Q |
| |
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|||||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||| | ||| ||||||||||||| |
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| T |
33767597 |
aagattttctctagttagtataataattaattaatatgattcttttgatatgctttctatcctctaattgagttttaaagggtaaaaagtcttca |
33767503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 61 - 234
Target Start/End: Complemental strand, 32063405 - 32063230
Alignment:
| Q |
61 |
ctttcatatgtgatgaaatgtctccttgtataagattttgctgtatgnnnnnnnccataatcaaaatatcattataagatttttt--ctagttactataa |
158 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
32063405 |
ctttcatatgcgatgaaatgtctccttgtataagattttgctgtatgtttttttccataatcaaaatatcattataagattttttttctagttactataa |
32063306 |
T |
|
| Q |
159 |
tagttaattaacatgattcttttgatatgctttctatccactaattgagtttcacaggataaaaagtcttcactac |
234 |
Q |
| |
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||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
32063305 |
tagttaattaatatgattcttttgatatgttttctatcctctaattgagtttcacagggtaaaaagtcttcactac |
32063230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 32063437 - 32063397
Alignment:
| Q |
14 |
cagagaaatatgaaaggtaggtgttatattggctttcatat |
54 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32063437 |
cagagaaatgtgaaaggtaggtgttatattggctttcatat |
32063397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 122 - 234
Target Start/End: Complemental strand, 24142183 - 24142071
Alignment:
| Q |
122 |
caaaatatcattataagattttttctagttactataatagttaattaacatgattcttttgatatgctttctatccactaattgagtttcacaggataaa |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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|
| T |
24142183 |
caaaatatcattataagattttttctagttactataatagttaattaatatgattcttttgatatgctttctatcctctaattgagtttcacagggtaaa |
24142084 |
T |
|
| Q |
222 |
aagtcttcactac |
234 |
Q |
| |
|
||||||||||||| |
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|
| T |
24142083 |
aagtcttcactac |
24142071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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