View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9067_low_14 (Length: 357)

Name: NF9067_low_14
Description: NF9067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9067_low_14
NF9067_low_14
[»] chr2 (3 HSPs)
chr2 (120-234)||(13732048-13732162)
chr2 (271-340)||(13732522-13732591)
chr2 (1-56)||(13731926-13731981)


Alignment Details
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 120 - 234
Target Start/End: Original strand, 13732048 - 13732162
Alignment:
Q  120 aagagggtggcgcgttgaagtgacgcgcgtggggcgagtgggggaatggataattggtgttgtaaggtcatagtaagtgaactgactcttgtttcctgtt 219  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13732048 aagagggtggcgcgttgaagggacgcgcgtggggcgagtgggggaatggataattggtgttgtaaggtcatagtaagtgaactgactcttgtttcctgtt 13732147  T
Q  220 atttggttttaatta 234  Q
    |||| ||||||||||    
T  13732148 atttagttttaatta 13732162  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 340
Target Start/End: Original strand, 13732522 - 13732591
Alignment:
Q  271 ggatagaaaatgtaaacactttcaaaggtttcaattatgaacctaaaacatttgtcaaaacaaaattatg 340  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  13732522 ggatagaaaatgtaaacacttttaaaggtttcaattatcaacctaaaacatttgtcaaaacaaaattatg 13732591  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 13731926 - 13731981
Alignment:
Q  1 agaaatcagaatcggagttgagttcggtgaaggtggggggagatgatgacatggcg 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13731926 agaaatcagaatcggagttgagttcggtgaaggtggggggagatgatgacatggcg 13731981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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