View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9067_low_15 (Length: 311)
Name: NF9067_low_15
Description: NF9067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9067_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 2426491 - 2426781
Alignment:
| Q |
1 |
ctcactattattaaacaaattaaatgtgtgattccctaaattatgtaagactaaaaattccataacccatataagtttgattcaataatttgaaaagagt |
100 |
Q |
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| T |
2426491 |
ctcactattattaaacaaattaaatgtgtgattccctaaattatgtaagactaaaaattccataacccatataagtttgattcaataatttgagaagagt |
2426590 |
T |
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| Q |
101 |
agagttagaagtaggtagttagcacttagcatttttctcaaactattgtacgtatgcatgtannnnnnnnnnagaggagttctcaaactattatataaca |
200 |
Q |
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| T |
2426591 |
agagttagaagtaggtagttagcacttagcatttttctcaaactattgtacgtatgcatgtattttttttttagaggagttctcaaactattatacaac- |
2426689 |
T |
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| Q |
201 |
tatatatatgagttaattacacaagctgattgaattctctttttgtatattttgatacaaacaagcaggcttctggggttaaaattagtaacatt |
295 |
Q |
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| T |
2426690 |
---atatatgagttaattacacaagctgattgaattctctttttgtatattttgatacaaacaagcaggcttctggggttaaaattagtaacatt |
2426781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 1456795 - 1457070
Alignment:
| Q |
19 |
attaaatgtgtgattccctaaattatgtaagactaaaaattccataacccatataagtttgattcaataatttgaaaagagtagagttagaagtaggtag |
118 |
Q |
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| T |
1456795 |
attaaatgtgtgattccctaaattatgtaagactaaaaattccatagcccatataagtttgattcaataatttgaaaaaagtagagttagaagtaggtag |
1456894 |
T |
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| Q |
119 |
ttagcacttagcatttttctcaaactattgtacgtatgcatgtannnnnnnnnnagaggagttctcaaactattatataacatatatatatgagttaatt |
218 |
Q |
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| T |
1456895 |
ttagcacttagcatttttctcaaactattgtacgtatgcatgta-tttttttttagaggagttctcaaactattatacaacatatatatatgagttaatt |
1456993 |
T |
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| Q |
219 |
acacaagctgattgaattctctttttgtatattttgatacaaacaagcaggcttctggggttaaaattagtaacatt |
295 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1456994 |
acacaagctgattgaattatctttttgtatattttgatacaaacaagcaggcttctggggttaaaattagtaacatt |
1457070 |
T |
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