View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9067_low_2 (Length: 686)
Name: NF9067_low_2
Description: NF9067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9067_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 560; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 71 - 678
Target Start/End: Complemental strand, 37232539 - 37231933
Alignment:
| Q |
71 |
attatacatattattgtcgatcattgtttggacttacatttgtttatcttaaaaataattcttatatttttaatgaatttgataaccaaaaaagttaata |
170 |
Q |
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| T |
37232539 |
attattcatattattgtcgatcattgtttagacttacatttgtttatcttaaaaataattcgaatatttttaaagaatttgataaccaaaaaagttaata |
37232440 |
T |
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| Q |
171 |
ttcccatacagaattgaaaactgaacaaggaaaaataatttcaattttgtttggtaatttctttcatacacaagtactatgttaattacaaccaaacaat |
270 |
Q |
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| T |
37232439 |
ttcccatacagaattgaaaactgaacaaggacaaataatttcaattttgtttggtaatttctttcatacacaagtactatgttaattacaaccaaacaat |
37232340 |
T |
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| Q |
271 |
aatgtacaaatgatattttgatttggaatcagttgtttcaactttgtttcttcacaatcttgtcaattaagggttcaacgaatgattctaattcctccat |
370 |
Q |
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| T |
37232339 |
aatgtacaaatgatattttgatttggaatgagttgtttcaactttgtttcttcacaatcttgtcaattaagggttcaacgaatgattctaattcctccat |
37232240 |
T |
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| Q |
371 |
atcattagtcaccttttcaacctgtgtgtgccaaaaatgaatcaagtaatcataattagtggtaaatgttaaatagtgataataatagagtaagaagtaa |
470 |
Q |
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| T |
37232239 |
atcattagtcaccttttcaacctgtgtgtgccaaaaattaatcaagtaatcataattagtggtaaatgtt-aatagtgataataatagagtaagaagtaa |
37232141 |
T |
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| Q |
471 |
gtaccttgtgtatgaattcttctgttatttgagcaccatgaacagcttgttttgatgcactttcaacaaccaccgctactttctttagcttagcatcctc |
570 |
Q |
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| T |
37232140 |
gtaccttgtgtatgaattcttctgttatttgagcaccatgaacagcttgttttgatgcactttctacaaccaccgctactttctttagcttagcatcctc |
37232041 |
T |
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| Q |
571 |
aggaagcatctctgctaaatcctcacttaccttctctgctacggttgcaactttttctactacttctgccactttttcaaccccttcaatcacaatctct |
670 |
Q |
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| T |
37232040 |
aggaagcgtctctgctaaatcctcacttaccttctctgctacggttgcaactttttctactacttctgccactttttcaaccccttcaatcacaatctct |
37231941 |
T |
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| Q |
671 |
gcttctcc |
678 |
Q |
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|||||||| |
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| T |
37231940 |
gcttctcc |
37231933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 37232612 - 37232557
Alignment:
| Q |
23 |
gccctgtttcgatccgtgtgactacgattcattcattctattaatttaattataca |
78 |
Q |
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| T |
37232612 |
gccctgtttcgatctgtgtgactacgattcattcattctattaatttaattataca |
37232557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 474 - 535
Target Start/End: Complemental strand, 37240164 - 37240103
Alignment:
| Q |
474 |
ccttgtgtatgaattcttctgttatttgagcaccatgaacagcttgttttgatgcactttca |
535 |
Q |
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|||||||| |||||||| |||||| || |||||||||||| | |||||||||||||||||| |
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| T |
37240164 |
ccttgtgtgtgaattctactgttagttatgcaccatgaacaacatgttttgatgcactttca |
37240103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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