View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9067_low_3 (Length: 607)
Name: NF9067_low_3
Description: NF9067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9067_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 1 - 590
Target Start/End: Original strand, 35435029 - 35435619
Alignment:
| Q |
1 |
gacctaaaaaagtaccataccgaaggaggaatgaatgtgtgaatattcgaacttgtaccctttgagggatttcttgcattttatttttgtgtgtatgtaa |
100 |
Q |
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| T |
35435029 |
gacctaaaaaagtaccataacgaaggaggaatgaatgtgtgaatattcgaacttgtaccctttgagggatttcttgcattttatttttgtgtgtatgtaa |
35435128 |
T |
|
| Q |
101 |
gtgatccactaagtaaatacttcatagtaatacgccacagctaaattgggaaagaaattaattaagagcactagcaatgacatattctatagtagatcct |
200 |
Q |
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| T |
35435129 |
gtgatccactaagtaaatacttcatagtaatacgccacagctaaattgggaaagaaattaattaagaccactagcaatgacatattctatagtagatcct |
35435228 |
T |
|
| Q |
201 |
tgagcatgtatatcattttgtttttaaaatggccaatagcacaaatgaacaaaagcaaattaaagttgcactaatacttggttagtgaccttattttgac |
300 |
Q |
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| T |
35435229 |
tgagcatgtatatcattttgtttttaaaatggccaatagcacaaatgaacaaaagcaaattaaagttgcactaatacttggttagtgaccttattttgac |
35435328 |
T |
|
| Q |
301 |
taataccatttgtacaaattaaattaagaaatctcttacacgacttaaaataaccttatagaacactctaagcattgttgtcgtctttcaatgatggtca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||| |||||| ||||||||||| |
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| T |
35435329 |
taataccatttgtacaaattaaattaagaaatctcttacaccacttaaaataacctcatagaacactctaaacattgttgttgtcttttaatgatggtca |
35435428 |
T |
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| Q |
401 |
ttctgacgccttaaaagaacattgtaacttttctttatttacgaaggtacagtaaataatgtaaac-tccaaataccacgttcgattcctattgattaaa |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||| |
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| T |
35435429 |
ttctgacgccttaaaagaacattgtaacttttctttatttacgaaggtacagtaaataatgtaaacttcaaaatatcacgttcgattcctattgattaaa |
35435528 |
T |
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| Q |
500 |
aaagactaaggtagtggtttttcactcttgcctatttaacaagaaaactagagcattactaggtaggatttaaaaatttgaagtccaaaac |
590 |
Q |
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| T |
35435529 |
aaagactaaggtagtggtttttccctcttgcctatttaacaagaaaactagagcattactaggtaggatttaaaaatttgaagtccaaaac |
35435619 |
T |
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