View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9067_low_6 (Length: 468)
Name: NF9067_low_6
Description: NF9067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9067_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 322 - 451
Target Start/End: Original strand, 8307241 - 8307369
Alignment:
| Q |
322 |
tgtaattagactaaaaaagtaaattagattaaaacattattaatatctaatcagtgtacatgtgggtgtctggacaagttaattgatagacttacatttt |
421 |
Q |
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| T |
8307241 |
tgtaattagactaaaaaaataaattagattaaaacattattaatatctaattagtgtacatgt-ggcgtctggacaagttaattgatagacttacatttt |
8307339 |
T |
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| Q |
422 |
gcatgatgtttttagaatgtgtcttaattg |
451 |
Q |
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| T |
8307340 |
ggatgatgtttttagaatgtctcttaattg |
8307369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 8306727 - 8306797
Alignment:
| Q |
197 |
ttttaaaatacttcaatttagtctcttaattattattaaaaacaacaaaatagtccctaaactatcataaa |
267 |
Q |
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| T |
8306727 |
ttttgaaatacttcaatttagtctcttaattatcattaaaaacaacaaaatagtccctaaactatcataaa |
8306797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 268 - 323
Target Start/End: Original strand, 8306849 - 8306904
Alignment:
| Q |
268 |
ttcatttattctcctctaatccacagctattttgctagcttatgtattctcaaatg |
323 |
Q |
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| T |
8306849 |
ttcatttattctcctctaatccacagctgttttgctagcttatgtattctaaaatg |
8306904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 266
Target Start/End: Complemental strand, 22478521 - 22478489
Alignment:
| Q |
234 |
aaaaacaacaaaatagtccctaaactatcataa |
266 |
Q |
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| T |
22478521 |
aaaaacaacaaaatagtccctaaactatcataa |
22478489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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