View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9068_low_2 (Length: 462)
Name: NF9068_low_2
Description: NF9068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9068_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 151; Significance: 1e-79; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 268 - 451
Target Start/End: Original strand, 44840918 - 44841101
Alignment:
| Q |
268 |
ctcatttcatttcttgttttctaactattattannnnnnnctttcattttatgagcagagaaggaaaaaagcatgcaaactacacaaaccacactatctt |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44840918 |
ctcatttcatttcttgttttctaactattattatttttttctttcattttataagcagagaaagaaaaaagcatgcaaactgcacaaaccacactatctt |
44841017 |
T |
|
| Q |
368 |
tgatcactggtgagaagagcagtgagagccacgcgaaacgtgaagttcgggacaaaatgcaaaatgtcatgaaatgagtctgtg |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44841018 |
tgatcactggtgagaagagcagtgagagccacgcgaaacgtgaagttcgggacaaaatgcaaaatgtcatgaaatgagtctgtg |
44841101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 44840669 - 44840736
Alignment:
| Q |
17 |
agtatacatatacacacactcaaaaaggggcatcataatcaacacttggttacgaactcagacagaacac |
86 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
44840669 |
agtatacatatacac--actcaaaaaggggcattataatcaacacttggttacgaactcagacagaacac |
44840736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 170
Target Start/End: Original strand, 44840785 - 44840820
Alignment:
| Q |
135 |
ctagttcactttttacactgcttcatcacaaccgtt |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
44840785 |
ctagttcactttttacactgcttcatcacaaccgtt |
44840820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University