View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9069_high_1 (Length: 458)
Name: NF9069_high_1
Description: NF9069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9069_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 11 - 448
Target Start/End: Complemental strand, 49690151 - 49689714
Alignment:
| Q |
11 |
acatcattggccatgtttgtaaccattgaacactaatccacttgtttttaagttcagatatgctgttccaagttaccaccatattgttgttagatttttg |
110 |
Q |
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| T |
49690151 |
acatcattggccatgtttgtaaccattgaacactaatccatttgtttttaagttcagatatgctgttc-aagttaccaccatattgttgttagatttttg |
49690053 |
T |
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| Q |
111 |
ttggtgatgggaagagattgaatgg-aatggttatttgtaaaaataaaattcaaacattgagaaattatttcattttctcttccttttatccgcctcgtt |
209 |
Q |
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| T |
49690052 |
ttggtgatgggaagagattgcatgggaatggttatttgcaaaaataaaattcaaacattgagaaattatttcattttctcttcattttatccgcctcgtt |
49689953 |
T |
|
| Q |
210 |
taggaatatgcaatactagtatgctaaaagaccataacatccattagnnnnnnnaggaatatcaaatagcatgctaaaacattgcttttctcattcaatt |
309 |
Q |
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| T |
49689952 |
taggaatatgcaatactagtatgctaaaagaccataacatccattagtttttttaggaatatcaaatagtatgctaaaacattgcttttctcattcaatt |
49689853 |
T |
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| Q |
310 |
gcagtgtaattgtttatttttaatttctcatttattggttcttttgcagacaagagaatgagcttctccaagctgctaatcaaccccttcctgatgacga |
409 |
Q |
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| T |
49689852 |
gcagtgtaattgtttatttttaatttctcatttattggttcttttgcagacaagagaatgagcttctccaagctgctaatcaaccccttcctgatgacga |
49689753 |
T |
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| Q |
410 |
tgatgatgcatttgagtaggacccttgcgactgatgtcc |
448 |
Q |
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| T |
49689752 |
tgatgatacatttgagtaggacccttgcgactgctgtcc |
49689714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 184 - 427
Target Start/End: Complemental strand, 49684594 - 49684352
Alignment:
| Q |
184 |
tttctcttccttttatccgcctcgtttaggaatatgcaatactagtatgctaaaagaccataacatccattagnnnnnnnaggaatatcaaatagcatgc |
283 |
Q |
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| T |
49684594 |
tttcccttccatttatccgcctcgtttaggaatatgcgatactaatatgctaaaagaccataacatccattagtttttt-aggaatatctaatagtatgc |
49684496 |
T |
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| Q |
284 |
taaaacattgcttttctcattcaattgcagtgtaattgtttatttttaatttctcatttattggttcttttgcagacaagagaatgagcttctccaagct |
383 |
Q |
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| T |
49684495 |
taaaaaattgcttttctcattcaattgcaatgtaattgtttattttgaatctctcatttattggttcttttgcagacatgagaatgagcttctccaagct |
49684396 |
T |
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| Q |
384 |
gctaatcaaccccttcctgatgacgatgatgatgcatttgagta |
427 |
Q |
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| T |
49684395 |
gctaatcaaccccttcctgatgacgatgatgatgcttttgagta |
49684352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 49684804 - 49684628
Alignment:
| Q |
11 |
acatcattggccatgtttgtaaccattgaacactaatccacttgtttttaagttcagatatgctgttccaagttaccaccatattgttgttagatttttg |
110 |
Q |
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|||||||||||||||||| | ||| ||||||| ||||||| |||||||||||||| ||||||| ||| |||||||||||| |||||| |||||||| || |
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| T |
49684804 |
acatcattggccatgtttatgaccgttgaacattaatccatgtgtttttaagttcaaatatgctcttc-aagttaccaccacattgtttttagatttgtg |
49684706 |
T |
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| Q |
111 |
ttggtgatgggaagagattgaatgg-aatggttatttgtaaaaataaaattcaaacattgagaaattatttcattttc |
187 |
Q |
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| T |
49684705 |
taggtgatgggaagagattgcatgggaatggttatttgtaaaaataaaattcaaatattgagaaataatttcattttc |
49684628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 324 - 428
Target Start/End: Complemental strand, 49694702 - 49694597
Alignment:
| Q |
324 |
tatttttaatttctcatttatt-ggttcttttgcagacaagagaatgagcttctccaagctgctaatcaaccccttcctgatgacgatgatgatgcattt |
422 |
Q |
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| T |
49694702 |
tattttgaatttcttatgtatttggtgcttttgcagacatgagaatgagcttcaacaagctgctaaccaaccacttcctgatgatgacgacgatgcattt |
49694603 |
T |
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| Q |
423 |
gagtag |
428 |
Q |
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|||||| |
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| T |
49694602 |
gagtag |
49694597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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