View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9069_high_7 (Length: 225)

Name: NF9069_high_7
Description: NF9069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9069_high_7
NF9069_high_7
[»] chr7 (6 HSPs)
chr7 (9-208)||(20215238-20215437)
chr7 (112-171)||(46270678-46270737)
chr7 (21-137)||(28245554-28245669)
chr7 (112-171)||(14965692-14965751)
chr7 (112-171)||(15395164-15395223)
chr7 (29-140)||(47248822-47248933)
[»] scaffold0524 (1 HSPs)
scaffold0524 (11-207)||(6077-6273)
[»] chr8 (5 HSPs)
chr8 (9-209)||(14089228-14089428)
chr8 (109-201)||(42278786-42278878)
chr8 (112-164)||(36832953-36833005)
chr8 (112-171)||(5344400-5344459)
chr8 (112-171)||(34661192-34661251)
[»] chr6 (3 HSPs)
chr6 (69-208)||(13683100-13683239)
chr6 (26-131)||(30145949-30146054)
chr6 (112-171)||(3142168-3142227)
[»] chr5 (8 HSPs)
chr5 (9-138)||(43451990-43452119)
chr5 (9-172)||(17220575-17220738)
chr5 (115-166)||(20818048-20818099)
chr5 (112-171)||(38365967-38366026)
chr5 (29-171)||(10016054-10016196)
chr5 (112-201)||(35335263-35335352)
chr5 (112-172)||(6659815-6659875)
chr5 (112-175)||(36339931-36339994)
[»] chr4 (4 HSPs)
chr4 (21-138)||(902641-902758)
chr4 (29-174)||(5955928-5956073)
chr4 (112-201)||(26938429-26938518)
chr4 (112-163)||(30843848-30843899)
[»] chr1 (7 HSPs)
chr1 (64-209)||(10886770-10886915)
chr1 (29-174)||(43627180-43627325)
chr1 (113-171)||(42093855-42093913)
chr1 (112-171)||(26115425-26115484)
chr1 (112-171)||(28792627-28792686)
chr1 (29-164)||(35066734-35066869)
chr1 (112-174)||(50547082-50547144)
[»] chr3 (4 HSPs)
chr3 (21-136)||(27990519-27990634)
chr3 (112-171)||(8605982-8606041)
chr3 (112-174)||(43725557-43725619)
chr3 (112-174)||(42724015-42724077)
[»] chr2 (4 HSPs)
chr2 (9-105)||(25966648-25966744)
chr2 (9-104)||(32463065-32463160)
chr2 (9-136)||(32208757-32208883)
chr2 (113-163)||(3407391-3407441)


Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 20215238 - 20215437
Alignment:
Q  9 tggacatcacaccatacacatggtctctgatgcagcccaaccttacgctcagctctaagtacccatgatctccatcctcctaacaagcaatctcatccat 108  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20215238 tggacatcacaccatacacatggtctatgatgcagcccaaccttacgctcagctctaagtacccatggtctccatcctcctaacaagcaatctcatccat 20215337  T
Q  109 gacctcacgctctggtggcctcggcaccggtactgacatgtcaggaagaatcatgcgttgatgagaccggtgataaaacgactagatgtatccctctact 208  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20215338 gacctcacgctctggtggcctcggcaccggtactggcatgttaggaagaatcatgcgttgatgagaccggtgataaaaccactagatgtatccctctact 20215437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 46270678 - 46270737
Alignment:
Q  112 ctcacgctctggtggcctcggcaccggtactgacatgtcaggaagaatcatgcgttgatg 171  Q
    ||||||||| |||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  46270678 ctcacgctccggtggcctcggcaccggtaccgacatgtcatgaagaatcatgcgtggatg 46270737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 28245669 - 28245554
Alignment:
Q  21 catacacatggtctctgatgcagcccaaccttacgctcagctctaagtacccatgatctccatcctcctaacaagcaatctcatccatgacctcacgctc 120  Q
    ||||||||||||||||||| | | |||||||| ||| ||| |||||| |  |||| ||| |||| || | |  |||||||||||| |||||||| |||||    
T  28245669 catacacatggtctctgatac-gaccaaccttccgcccagttctaagaattcatgctcttcatcatcttgagcagcaatctcatcaatgacctcccgctc 28245571  T
Q  121 tggtggcctcggcaccg 137  Q
    |||||||||||||||||    
T  28245570 tggtggcctcggcaccg 28245554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 14965751 - 14965692
Alignment:
Q  112 ctcacgctctggtggcctcggcaccggtactgacatgtcaggaagaatcatgcgttgatg 171  Q
    ||||||||| |||||||||||||||||||  | ||||||| |||||||||||||| ||||    
T  14965751 ctcacgctccggtggcctcggcaccggtagcggcatgtcatgaagaatcatgcgtggatg 14965692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 15395223 - 15395164
Alignment:
Q  112 ctcacgctctggtggcctcggcaccggtactgacatgtcaggaagaatcatgcgttgatg 171  Q
    ||||||||| |||||||||||||||||||  | ||||||| |||||||||||||| ||||    
T  15395223 ctcacgctccggtggcctcggcaccggtagcggcatgtcatgaagaatcatgcgtggatg 15395164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 140
Target Start/End: Complemental strand, 47248933 - 47248822
Alignment:
Q  29 tggtctctgatgcagcccaaccttacgctcagctctaagtacccatgatctccatcctcctaacaagcaatctcatccatgacctcacgctctggtggcc 128  Q
    ||||||||||||| || || |||| |||| |||| || |||| || | ||||||||||||| |  |||   | |||| | || |||||||||||||||||    
T  47248933 tggtctctgatgcggctcatcctttcgctaagctgtaggtacgcaaggtctccatcctcctgagcagcttgcgcatcaaggatctcacgctctggtggcc 47248834  T
Q  129 tcggcaccggta 140  Q
    ||||||||||||    
T  47248833 tcggcaccggta 47248822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 6077 - 6273
Alignment:
Q  11 gacatcacaccatacacatggtctctgatgcagcccaaccttacgctcagctctaagtacccatgatctccatcctcctaacaagcaatctcatccatga 110  Q
    ||||||||| ||||||||||||| ||||| | || ||||||| |||| || | |||||||||||| ||||||||||||| |  ||||  | |||| ||||    
T  6077 gacatcacagcatacacatggtcactgatacggctcaaccttccgctaagttataagtacccatgctctccatcctcctcaacagcacgcgcatcaatga 6176  T
Q  111 cctcacgctctggtggcctcggcaccggtactgacatgtcaggaagaatcatgcgttgatgagaccggtgataaaacgactagatgtatccctctac 207  Q
    |||||||||||||||||||||||||||||||    ||||||| ||||||||| ||| | |||||||||| ||||||| |||  ||||||||||||||    
T  6177 cctcacgctctggtggcctcggcaccggtaccagtatgtcagcaagaatcatacgtgggtgagaccggtaataaaaccactcaatgtatccctctac 6273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 14089228 - 14089428
Alignment:
Q  9 tggacatcacaccatacacatggtctctgatgcagcccaaccttacgctcagctctaagtacccatgatctccatcctcctaacaagcaatctcatccat 108  Q
    ||||||||||| |  ||||||| ||||||||||||| ||||||| ||||||| | || ||||||||| |||||||| |||| |  |||||   |||| ||    
T  14089228 tggacatcacagctcacacatgctctctgatgcagctcaaccttccgctcagttgtatgtacccatgctctccatcgtcctgagcagcaactacatcaat 14089327  T
Q  109 gacctcacgctctggtggcctcggcaccggtactgacatgtcaggaagaatcatgcgttgatgagaccggtgataaaacgactagatgtatccctctact 208  Q
    ||||||||||||||||||||||| || || |||   |||||||||||||||||||| | |||||||  ||||||||||| ||| ||||||||||| ||||    
T  14089328 gacctcacgctctggtggcctcgacatcgataccagcatgtcaggaagaatcatgcatggatgagattggtgataaaaccactcgatgtatccctttact 14089427  T
Q  209 g 209  Q
    |    
T  14089428 g 14089428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 109 - 201
Target Start/End: Complemental strand, 42278878 - 42278786
Alignment:
Q  109 gacctcacgctctggtggcctcggcaccggtactgacatgtcaggaagaatcatgcgttgatgagaccggtgataaaacgactagatgtatcc 201  Q
    |||||||||||||||||||||||||| |||||| | |||||| ||||||||||||||| ||||||||   || |||||| ||| |||||||||    
T  42278878 gacctcacgctctggtggcctcggcaacggtaccggcatgtctggaagaatcatgcgtggatgagacgcctggtaaaaccactcgatgtatcc 42278786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 36833005 - 36832953
Alignment:
Q  112 ctcacgctctggtggcctcggcaccggtactgacatgtcaggaagaatcatgc 164  Q
    |||||||||| |||||||||||| |||||| |||||||| |||||||||||||    
T  36833005 ctcacgctctagtggcctcggcatcggtaccgacatgtcgggaagaatcatgc 36832953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 5344459 - 5344400
Alignment:
Q  112 ctcacgctctggtggcctcggcaccggtactgacatgtcaggaagaatcatgcgttgatg 171  Q
    |||||||||||||||||||||||| ||||  | ||||||| |||||||||||||| ||||    
T  5344459 ctcacgctctggtggcctcggcacaggtagcggcatgtcatgaagaatcatgcgtggatg 5344400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 34661192 - 34661251
Alignment:
Q  112 ctcacgctctggtggcctcggcaccggtactgacatgtcaggaagaatcatgcgttgatg 171  Q
    ||||||||| ||||||||| |||||||||  | ||||||| |||||||||||||| ||||    
T  34661192 ctcacgctccggtggcctcagcaccggtagcggcatgtcatgaagaatcatgcgtggatg 34661251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 69 - 208
Target Start/End: Complemental strand, 13683239 - 13683100
Alignment:
Q  69 acccatgatctccatcctcctaacaagcaatctcatccatgacctcacgctctggtggcctcggcaccggtactgacatgtcaggaagaatcatgcgttg 168  Q
    ||||||| |||||||||| || |  ||||| |||||||||||||||||||||| |||||||||||| |||||  | |||||| ||||||||||||||| |    
T  13683239 acccatgctctccatccttctgagcagcaacctcatccatgacctcacgctctagtggcctcggcatcggtaacggcatgtcgggaagaatcatgcgtgg 13683140  T
Q  169 atgagaccggtgataaaacgactagatgtatccctctact 208  Q
    ||||||||||| | ||||| ||| |||||| |||||||||    
T  13683139 atgagaccggtaaaaaaaccactggatgtacccctctact 13683100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 131
Target Start/End: Complemental strand, 30146054 - 30145949
Alignment:
Q  26 acatggtctctgatgcagcccaaccttacgctcagctctaagtacccatgatctccatcctcctaacaagcaatctcatccatgacctcacgctctggtg 125  Q
    ||||||||| |||| | |||||||||| |||  ||||||||| || |||| ||||||||||||| |  |||||||||||| | | ||||  |||||||||    
T  30146054 acatggtctttgatacggcccaaccttccgcctagctctaagaacacatgctctccatcctcctcagcagcaatctcatcaagggcctcctgctctggtg 30145955  T
Q  126 gcctcg 131  Q
    ||||||    
T  30145954 gcctcg 30145949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 3142168 - 3142227
Alignment:
Q  112 ctcacgctctggtggcctcggcaccggtactgacatgtcaggaagaatcatgcgttgatg 171  Q
    ||||||||| |||||||||||||||||||| | ||||||| |||||| ||||||| ||||    
T  3142168 ctcacgctccggtggcctcggcaccggtaccggcatgtcatgaagaaccatgcgtggatg 3142227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 43451990 - 43452119
Alignment:
Q  9 tggacatcacaccatacacatggtctctgatgcagcccaaccttacgctcagctctaagtacccatgatctccatcctcctaacaagcaatctcatccat 108  Q
    ||||||| ||| ||||||||||||||||||| | |||||||||| | | |||||||||||||||||| | | ||||||||| |  |||||||||||| ||    
T  43451990 tggacataacaacatacacatggtctctgatacggcccaaccttccccccagctctaagtacccatgcttttcatcctcctcaacagcaatctcatcaat 43452089  T
Q  109 gacctcacgctctggtggcctcggcaccgg 138  Q
    | |||| ||||||||||||||| |||||||    
T  43452090 ggcctcccgctctggtggcctcagcaccgg 43452119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 17220575 - 17220738
Alignment:
Q  9 tggacatcacaccatacacatggtctctgatgcagcccaaccttacgctcagctctaagtacccatgatctccatcctcctaacaagcaatctcatccat 108  Q
    ||||||| ||| |||||| |||||||||||| | |||||||||| ||| || ||||||| ||||||| ||||||||||||| |  |||||||||||| ||    
T  17220575 tggacataacaacatacatatggtctctgatacggcccaaccttccgcccaactctaagaacccatgctctccatcctcctgagcagcaatctcatcaat 17220674  T
Q  109 gacctcacgctctggtggcctcggcaccggtactgacatgtcaggaagaatcatgcgttgatga 172  Q
    || |||  ||||||||||| |||||||||| | |   |||||  |||||||||||||| |||||    
T  17220675 gatctcttgctctggtggcttcggcaccggaagttcaatgtctagaagaatcatgcgtggatga 17220738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 20818048 - 20818099
Alignment:
Q  115 acgctctggtggcctcggcaccggtactgacatgtcaggaagaatcatgcgt 166  Q
    |||||| |||||||||||||||||||| | |||||| |||||||||||||||    
T  20818048 acgctccggtggcctcggcaccggtaccggcatgtcgggaagaatcatgcgt 20818099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 38366026 - 38365967
Alignment:
Q  112 ctcacgctctggtggcctcggcaccggtactgacatgtcaggaagaatcatgcgttgatg 171  Q
    ||||||||| |||||||||||||||||||| | |||||  ||||||||||||||| ||||    
T  38366026 ctcacgctccggtggcctcggcaccggtaccggcatgtttggaagaatcatgcgtggatg 38365967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 171
Target Start/End: Complemental strand, 10016196 - 10016054
Alignment:
Q  29 tggtctctgatgcagcccaaccttacgctcagctctaagtacccatgatctccatcctcctaacaagcaatctcatccatgacctcacgctctggtggcc 128  Q
    ||||||||||||| || || |||| |||| || | ||||||| || | ||||||||||||| |  |||   | |||| | || ||||||||| |||||||    
T  10016196 tggtctctgatgcggctcatccttccgctaagttgtaagtacgcaaggtctccatcctcctgagcagcctgcgcatcaaggatctcacgctccggtggcc 10016097  T
Q  129 tcggcaccggtactgacatgtcaggaagaatcatgcgttgatg 171  Q
    | || |||||||| | |||||| ||||||||||||||| ||||    
T  10016096 ttggaaccggtaccggcatgtcgggaagaatcatgcgtggatg 10016054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 35335352 - 35335263
Alignment:
Q  112 ctcacgctctggtggcctcggcaccggtactgacatgtcaggaagaatcatgcgttgatgagaccggtgataaaacgactagatgtatcc 201  Q
    ||||||||| ||||||||||| || ||||| | |||||  ||||||||||||||| ||||||||   || |||||| ||| |||||||||    
T  35335352 ctcacgctccggtggcctcggaactggtaccggcatgttgggaagaatcatgcgtggatgagacacctggtaaaaccactcgatgtatcc 35335263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 6659875 - 6659815
Alignment:
Q  112 ctcacgctctggtggcctcggcaccggtactgacatgtcaggaagaatcatgcgttgatga 172  Q
    |||||||||  |||||||| |||||||||||| |||||  ||||||||||||||| |||||    
T  6659875 ctcacgctcccgtggcctcagcaccggtactggcatgtttggaagaatcatgcgtggatga 6659815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 175
Target Start/End: Complemental strand, 36339994 - 36339931
Alignment:
Q  112 ctcacgctctggtggcctcggcaccggtactgacatgtcaggaagaatcatgcgttgatgagac 175  Q
    ||||| ||| ||||||||||| |||||||  | |||||| ||||||||||||||| ||||||||    
T  36339994 ctcacactccggtggcctcggaaccggtatcggcatgtcgggaagaatcatgcgtggatgagac 36339931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 902758 - 902641
Alignment:
Q  21 catacacatggtctctgatgcagcccaaccttacgctcagctctaagtacccatgatctccatcctcctaacaagcaatctcatccatgacctcacgctc 120  Q
    |||||||||| ||||| || |  ||||||||| |||  | |||| || ||||||| ||||||||||||| |  || ||||||||| |||||||| |||||    
T  902758 catacacatgatctcttatacgacccaaccttccgcctaactcttagaacccatgctctccatcctcctgagcagaaatctcatcaatgacctcccgctc 902659  T
Q  121 tggtggcctcggcaccgg 138  Q
    ||||||||||| ||||||    
T  902658 tggtggcctcgacaccgg 902641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 174
Target Start/End: Original strand, 5955928 - 5956073
Alignment:
Q  29 tggtctctgatgcagcccaaccttacgctcagctctaagtacccatgatctccatcctcctaacaagcaatctcatccatgacctcacgctctggtggcc 128  Q
    ||||||||||||| || || |||| |||| |||| || |||| || | ||||||||||||| |  |||   | |||| | || ||||||||| |||||||    
T  5955928 tggtctctgatgcggctcatccttccgctaagctgtaggtacgcaaggtctccatcctcctgagtagcttgcgcatcaaggatctcacgctccggtggcc 5956027  T
Q  129 tcggcaccggtactgacatgtcaggaagaatcatgcgttgatgaga 174  Q
    ||||||||||||  | ||| ||| |||||||||||||| |||||||    
T  5956028 tcggcaccggtagcggcatatcatgaagaatcatgcgtggatgaga 5956073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 26938518 - 26938429
Alignment:
Q  112 ctcacgctctggtggcctcggcaccggtactgacatgtcaggaagaatcatgcgttgatgagaccggtgataaaacgactagatgtatcc 201  Q
    |||| |||||||||||||||| | |||||| | |||||| ||||||||||||||| ||||||||   || |||||| ||| |||||||||    
T  26938518 ctcatgctctggtggcctcggaatcggtaccggcatgtcgggaagaatcatgcgtggatgagacacctggtaaaaccactcgatgtatcc 26938429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 30843848 - 30843899
Alignment:
Q  112 ctcacgctctggtggcctcggcaccggtactgacatgtcaggaagaatcatg 163  Q
    ||||||||| |||||||||||||||||||| | |||||  ||||||||||||    
T  30843848 ctcacgctccggtggcctcggcaccggtaccggcatgtttggaagaatcatg 30843899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 209
Target Start/End: Complemental strand, 10886915 - 10886770
Alignment:
Q  64 taagtacccatgatctccatcctcctaacaagcaatctcatccatgacctcacgctctggtggcctcggcaccggtactgacatgtcaggaagaatcatg 163  Q
    |||||||||| | ||||||||||||| |  |||   | |||| | ||||||||| ||||||||||| || |||||||| | |||||| ||||||||||||    
T  10886915 taagtacccaaggtctccatcctcctgagcagctcgcgcatcaaggacctcacgttctggtggccttggtaccggtaccggcatgtctggaagaatcatg 10886816  T
Q  164 cgttgatgagaccggtgataaaacgactagatgtatccctctactg 209  Q
     || ||||||||   || |||||| ||| ||||||||| |||||||    
T  10886815 tgtggatgagacacctggtaaaaccactcgatgtatccatctactg 10886770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 174
Target Start/End: Original strand, 43627180 - 43627325
Alignment:
Q  29 tggtctctgatgcagcccaaccttacgctcagctctaagtacccatgatctccatcctcctaacaagcaatctcatccatgacctcacgctctggtggcc 128  Q
    ||||||||||||| || || |||| | || |||| || |||| || | ||| ||||||||||| ||||   | |||| | || |||||||||||||||||    
T  43627180 tggtctctgatgcggctcatccttccactaagctgtatgtacgcaaggtcttcatcctcctaagaagctcacgcatcaaggatctcacgctctggtggcc 43627279  T
Q  129 tcggcaccggtactgacatgtcaggaagaatcatgcgttgatgaga 174  Q
    ||| ||||||||  | ||||||| |||||||||||||| |||||||    
T  43627280 tcgacaccggtagcggcatgtcatgaagaatcatgcgtggatgaga 43627325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 42093855 - 42093913
Alignment:
Q  113 tcacgctctggtggcctcggcaccggtactgacatgtcaggaagaatcatgcgttgatg 171  Q
    ||||||||||||||||||||||||||||| | |||||  ||||||||||||||| ||||    
T  42093855 tcacgctctggtggcctcggcaccggtaccggcatgtttggaagaatcatgcgtggatg 42093913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 26115425 - 26115484
Alignment:
Q  112 ctcacgctctggtggcctcggcaccggtactgacatgtcaggaagaatcatgcgttgatg 171  Q
    ||||||||| |||||||||| ||||||||  | ||||||| |||||||||||||| ||||    
T  26115425 ctcacgctccggtggcctcgacaccggtaacggcatgtcatgaagaatcatgcgtggatg 26115484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 28792627 - 28792686
Alignment:
Q  112 ctcacgctctggtggcctcggcaccggtactgacatgtcaggaagaatcatgcgttgatg 171  Q
    ||||||||| ||||||||| |||||||||| | |||||  |||||||||||| |||||||    
T  28792627 ctcacgctccggtggcctcagcaccggtaccggcatgtttggaagaatcatgtgttgatg 28792686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 164
Target Start/End: Complemental strand, 35066869 - 35066734
Alignment:
Q  29 tggtctctgatgcagcccaaccttacgctcagctctaagtacccatgatctccatcctcctaacaagcaatctcatccatgacctcacgctctggtggcc 128  Q
    ||||||||||||| || || |||| |||| |||| ||||||  || | ||||||||||||| |  |||   | |||| | || ||||||||| |||||||    
T  35066869 tggtctctgatgcggctcatccttccgctaagctgtaagtaggcagggtctccatcctcctgagcagctcgcgcatcaaggatctcacgctccggtggcc 35066770  T
Q  129 tcggcaccggtactgacatgtcaggaagaatcatgc 164  Q
    ||||||||||||   ||||||  |||||||||||||    
T  35066769 tcggcaccggtatcaacatgtttggaagaatcatgc 35066734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 50547144 - 50547082
Alignment:
Q  112 ctcacgctctggtggcctcggcaccggtactgacatgtcaggaagaatcatgcgttgatgaga 174  Q
    ||||||||| ||||||||||||||  |||  | ||||||| |||||||||||||| |||||||    
T  50547144 ctcacgctccggtggcctcggcactagtagcggcatgtcatgaagaatcatgcgtggatgaga 50547082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 27990519 - 27990634
Alignment:
Q  21 catacacatggtctctgatgcagcccaaccttacgctcagctctaagtacccatgatctccatcctcct-aacaagcaatctcatccatgacctcacgct 119  Q
    |||| |||||||||||||| || |||||| || |||  ||||| ||| ||||||| ||||||||||||| ||||| |||||||||| | | |||| ||||    
T  27990519 catatacatggtctctgatacaacccaacatttcgcctagctccaagaacccatgctctccatcctcctcaacaa-caatctcatcaagggcctcccgct 27990617  T
Q  120 ctggtggcctcggcacc 136  Q
    ||||||| |||||||||    
T  27990618 ctggtggtctcggcacc 27990634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 8605982 - 8606041
Alignment:
Q  112 ctcacgctctggtggcctcggcaccggtactgacatgtcaggaagaatcatgcgttgatg 171  Q
    ||||||||| |||||||||||||||||||  | ||||||| |||||||||||||| ||||    
T  8605982 ctcacgctccggtggcctcggcaccggtagcggcatgtcatgaagaatcatgcgtggatg 8606041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 43725619 - 43725557
Alignment:
Q  112 ctcacgctctggtggcctcggcaccggtactgacatgtcaggaagaatcatgcgttgatgaga 174  Q
    ||||||||| |||||||||| ||| ||||| |||||||  ||||||||||||||| |||||||    
T  43725619 ctcacgctccggtggcctcgacactggtaccgacatgtttggaagaatcatgcgtggatgaga 43725557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 42724077 - 42724015
Alignment:
Q  112 ctcacgctctggtggcctcggcaccggtactgacatgtcaggaagaatcatgcgttgatgaga 174  Q
    ||||| ||| ||||||||||  |||||||| | |||||| ||||||||||||||| |||||||    
T  42724077 ctcacactccggtggcctcgaaaccggtaccggcatgtcgggaagaatcatgcgtggatgaga 42724015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 25966744 - 25966648
Alignment:
Q  9 tggacatcacaccatacacatggtctctgatgcagcccaaccttacgctcagctctaagtacccatgatctccatcctcctaacaagcaatctcatc 105  Q
    ||||||||||| ||||||||||||||||||| | || ||||||| ||  ||  || |||||||| |||||||||||||||| |  ||||||||||||    
T  25966744 tggacatcacaacatacacatggtctctgatacggctcaacctttcgaacaaatccaagtacccctgatctccatcctcctcagcagcaatctcatc 25966648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 32463065 - 32463160
Alignment:
Q  9 tggacatcacaccatacacatggtctctgatgcagcccaaccttacgctcagctctaagtacccatgatctccatcctcctaacaagcaatctcat 104  Q
    |||||||||||||||| |||||||||||||| | |||||||||| ||  ||| || |||||||| || | || |||||||| | ||||||||||||    
T  32463065 tggacatcacaccatagacatggtctctgatacggcccaaccttccggccagatccaagtacccctgctttctatcctcctcagaagcaatctcat 32463160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 32208883 - 32208757
Alignment:
Q  9 tggacatcacaccatacacatggtctctgatgcagcccaaccttacgctcagctctaagtacccatgatctccatcctcc-taacaagcaatctcatcca 107  Q
    ||||||| ||| |||| | |||||||||||| | |||||||||| | | || |||| || ||||||| |||||||||||| |||||| |||||||||| |    
T  32208883 tggacataacaacatatatatggtctctgatacggcccaaccttccacccaactcttagaacccatgctctccatcctccttaacaa-caatctcatcaa 32208785  T
Q  108 tgacctcacgctctggtggcctcggcacc 136  Q
     ||||||  | |||||||| |||||||||    
T  32208784 cgacctc-tgatctggtgggctcggcacc 32208757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 163
Target Start/End: Original strand, 3407391 - 3407441
Alignment:
Q  113 tcacgctctggtggcctcggcaccggtactgacatgtcaggaagaatcatg 163  Q
    |||||||| |||||||||||||||||||  | ||||||| |||||||||||    
T  3407391 tcacgctccggtggcctcggcaccggtagcggcatgtcatgaagaatcatg 3407441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University