View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9069_low_1 (Length: 745)

Name: NF9069_low_1
Description: NF9069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9069_low_1
NF9069_low_1
[»] chr7 (1 HSPs)
chr7 (13-745)||(25336282-25337016)


Alignment Details
Target: chr7 (Bit Score: 597; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 13 - 745
Target Start/End: Complemental strand, 25337016 - 25336282
Alignment:
Q  13 attatactcttcttaatcttgaatttttctcttgtttttt-atttaaaaggtggaatcatgtacataaattgaatgtacacaaagatctaccaaataaga 111  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  25337016 attatactcttcttaatcttgaatttttctcttgtttttttatttaaaaggtggaattatgtacataaattgaatgtacacaaagatctaccaaataaaa 25336917  T
Q  112 atgtaaggatcacactaatcacgtttggagtttaagcctgtttatttaaataatggaccaaaatgcccttctatatgacaaaaatgaagtccaacaattt 211  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25336916 atgtaaggatcacactaatcacgtttggagtttaagcccgtttatttaaataatggaccaaaatgcccttctatatgacaaaaatgaagtccaacaattt 25336817  T
Q  212 tattcttcctctttacaaaagctataaaatttgtgcaagttgttccaatattgagtgggacatgatagcttccttatatattgnnnnnnncaattttcaa 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  25336816 tattcttcctctttacaaaagctataaaatttgtgcaagttgttccaatattgagtgggacatgatagcttccttatatattgtttttttcaattttcaa 25336717  T
Q  312 cttctcctttcctttttgatagtaacttttagttgcatggataannnnnnnnnnnnnnnnnnnnnnnctcttgaaattttcatgtatgccccatttgtcc 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||                       |||||||||||||||||||||||||||||||||    
T  25336716 cttctcctttcctttttgatagtaacttttagttgcatggataactttctttctttcttctttcttcctcttgaaattttcatgtatgccccatttgtcc 25336617  T
Q  412 ttttgtgttttttgagaaatcttttaaattatgtacgttctcatttttgtcattcattttcttccaaatgtaagttagctagatttagatgtcaaattag 511  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25336616 ttttgtgttttttgagaaatcttttaaattatgtaccttctcatttttgtcattcattttcttccaaatgtaagttagctagatttagatgtcaaattag 25336517  T
Q  512 aaattagaaaattaaaatagaaatttcaactctttttggttttcttttggttgaaaattactatttatgttgtgctttataatgtcataagatatttaag 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  25336516 aaattagaaaattaaaatagaaatttcaactctttttggttttcttttggttgaaaattactattgatgttgtgctttataatgtcatatgatatttaag 25336417  T
Q  612 aaatttatttttgtgcaaacaagaaagaagaggttgtatgaaaggtacttcaattaagccat-aacaaagagagaaaatagaaccataagcagaagttga 710  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  25336416 aaatttatttttgtgcaaacaagaaagaagaggttgtttgaaaggtacttcaattaagccataaacaaagagagaaaatagaaccataagcaaaagttga 25336317  T
Q  711 cataattgggctaatttaacatgaagaaagaaaag 745  Q
    |||||||||||||||||||||||||||||||||||    
T  25336316 cataattgggctaatttaacatgaagaaagaaaag 25336282  T

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