View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9069_low_12 (Length: 286)
Name: NF9069_low_12
Description: NF9069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9069_low_12 |
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| [»] scaffold0346 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 4332941 - 4332668
Alignment:
| Q |
1 |
actttattgatttcaccatattctatgcaattcggattatagaatcccaacggcaaaaacattcgataaaaatctcaaacagaagttaaaatatttcaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||| || |||||||||||||||||| | |
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| T |
4332941 |
actttattgatttcaccatattctatgcaatttggattatagaattccaatggcaaaaacattcgataaaaatctctaaaagaagttaaaatatttcaga |
4332842 |
T |
|
| Q |
101 |
ttttagaatacgaataaggtgcatgaaaaaactataggacgnnnnnnntaatagccatatttcaaatgtctaaggaaaatggttggaaagaccataacag |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4332841 |
ttttagaatacgaataaggtgcatgagaaaactataggacaaaaaaaataatagccatatttcaaatgtctaaggaaaatggttggaaagaccataacag |
4332742 |
T |
|
| Q |
201 |
tcgtctacaaagtaagctttgcggtgtcatgacttttatcacttgttatgtgagtggaatacatagttcttatg |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4332741 |
tcgtctacaaagtaagctttgcggtgtcatgacttttatcacttgttatgtgagtggaatacatagttcttatg |
4332668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 4337188 - 4336915
Alignment:
| Q |
1 |
actttattgatttcaccatattctatgcaattcggattatagaatcccaacggcaaaaacattcgataaaaatctcaaacagaagttaaaatatttcaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||| || |||||||||||||||||| | |
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| T |
4337188 |
actttattgatttcaccatattctatgcaatttggattatagaattccaatggcaaaaacattcgataaaaatctctaaaagaagttaaaatatttcaga |
4337089 |
T |
|
| Q |
101 |
ttttagaatacgaataaggtgcatgaaaaaactataggacgnnnnnnntaatagccatatttcaaatgtctaaggaaaatggttggaaagaccataacag |
200 |
Q |
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| T |
4337088 |
ttttagaatacgaataaggtgcatgagaaaactataggacaaaaaaaataatagccatatttcaaatgtctaaggaaaatggttggaaagaccataacag |
4336989 |
T |
|
| Q |
201 |
tcgtctacaaagtaagctttgcggtgtcatgacttttatcacttgttatgtgagtggaatacatagttcttatg |
274 |
Q |
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| T |
4336988 |
tcgtctacaaagtaagctttgcggtgtcatgacttttatcacttgttatgtgagtggaatacatagttcttatg |
4336915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 4404553 - 4404504
Alignment:
| Q |
217 |
ctttgcggtgtcatgacttttatcacttgttatgtgagtggaatacatag |
266 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4404553 |
ctttggggtgtcatgacttttatcacttgttatgtgagtggaatagatag |
4404504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 4451794 - 4451744
Alignment:
| Q |
217 |
ctttgcggtgtcatgacttttatcacttgttatgtgagtggaatacatagt |
267 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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|
| T |
4451794 |
ctttgcggtgtcatgacttttatcacttgatatgtaggtggaatacatagt |
4451744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 255
Target Start/End: Original strand, 4478303 - 4478331
Alignment:
| Q |
227 |
tcatgacttttatcacttgttatgtgagt |
255 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
4478303 |
tcatgacttttatcacttgttatgtgagt |
4478331 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0346 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0346
Description:
Target: scaffold0346; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 13122 - 13396
Alignment:
| Q |
1 |
actttattgatttcaccatattctatgcaattcggattatagaatcccaacggcaaaaacattcgataaaaatctcaaacagaagttaaaatatttcaaa |
100 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||| ||||||||| ||||| || ||||||||||||||| | |
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| T |
13122 |
actttattgatttcaccatgttccatgcaattcggattatagaattccaacggcaaaaacatctgataaaaatttcaaaaagtagttaaaatatttcaga |
13221 |
T |
|
| Q |
101 |
ttttagaatacgaataaggtgcatgaaaaaactataggacgnnnnnnntaatagccatatttcaaatgtctaaggaaaatggt-tggaaagaccataaca |
199 |
Q |
| |
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|||||||||||||||||| |||| || |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
13222 |
ttttagaatacgaataagatgcacgagaaaactataggacgaaaaaagtaatagccatatttgaaatgtctaaggaaaatggtgtggaaagaccataaca |
13321 |
T |
|
| Q |
200 |
gtcgtctacaaagtaagctttgcggtgtcatgacttttatcacttgttatgtgagtggaatacatagttcttatg |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13322 |
gtcgtctacaaagtaagctttgcggtgtcatgacttttatcacttgttatgtgagtggaatacatagttcttatg |
13396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 7632780 - 7632678
Alignment:
| Q |
24 |
tatgcaattcggattatagaatcccaacggcaaaaacattcgataaaaatct-caaacagaagttaaaatatttcaaattttagaatacgaataaggtgc |
122 |
Q |
| |
|
||||||||||| ||||||||||| |||| || ||||| ||||||||| || |||| | | ||| ||||||||||||||||| ||| ||||||||||| |
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| T |
7632780 |
tatgcaattcgaattatagaatctgaacgacataaacacccgataaaaaccttcaaaaatacgttgaaatatttcaaattttaaaatttgaataaggtgc |
7632681 |
T |
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| Q |
123 |
atg |
125 |
Q |
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||| |
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| T |
7632680 |
atg |
7632678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 31078768 - 31078852
Alignment:
| Q |
23 |
ctatgcaattcggattatagaatcccaacggcaaaaacattcgataaaaatctcaaacagaagttaaaatatttcaaattttaga |
107 |
Q |
| |
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|||||||||| |||| || ||||| ||||||| ||| |||| |||||||| || || | | ||||||| ||||||||||||||| |
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| T |
31078768 |
ctatgcaatttggataatcgaatctgaacggcataaatattccataaaaatttccaaaacacgttaaaacatttcaaattttaga |
31078852 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 13019633 - 13019685
Alignment:
| Q |
23 |
ctatgcaattcggattatagaatcccaacggcaaaaacattcgataaaaatct |
75 |
Q |
| |
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||||||| || |||||||||||||| ||||||| ||||| || |||||||||| |
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| T |
13019633 |
ctatgcagtttggattatagaatccgaacggcataaacactccataaaaatct |
13019685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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