View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9069_low_18 (Length: 227)
Name: NF9069_low_18
Description: NF9069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9069_low_18 |
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| [»] chr7 (4 HSPs) |
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| [»] scaffold0346 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 4333298 - 4333079
Alignment:
| Q |
8 |
caactcaactctagataacttttggtgtgagtagaagtgaaggagatgtgctctatttagaggtgatcagccgtagatgagtagcaaatcaaatggctag |
107 |
Q |
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||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4333298 |
caactcaactctagataacttttggtgcgagtagaactgaaggagatgtgctctatttagaggtgataagccgtagatgagtagcaaatcaaatggctag |
4333199 |
T |
|
| Q |
108 |
gatcgtttcattgttataaaattaatggtttactctcgtctcataaatgagtaattgttggaaaagttggcttaagaattttattaattcacacattaac |
207 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4333198 |
gatcgtttaattgttataaaattaatggtttactctcgtctcataaatgagtaattgttggaaaagttggcttaagaattttattaattcacacattaac |
4333099 |
T |
|
| Q |
208 |
actccttgtgttccaatagt |
227 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
4333098 |
actccttgtgttccaatagt |
4333079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 4337545 - 4337326
Alignment:
| Q |
8 |
caactcaactctagataacttttggtgtgagtagaagtgaaggagatgtgctctatttagaggtgatcagccgtagatgagtagcaaatcaaatggctag |
107 |
Q |
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||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4337545 |
caactcaactctagataacttttggtgcgagtagaactgaaggagatgtgctctatttagaggtgataagccgtagatgagtagcaaatcaaatggctag |
4337446 |
T |
|
| Q |
108 |
gatcgtttcattgttataaaattaatggtttactctcgtctcataaatgagtaattgttggaaaagttggcttaagaattttattaattcacacattaac |
207 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4337445 |
gatcgtttaattgttataaaattaatggtttactctcgtctcataaatgagtaattgttggaaaagttggcttaagaattttattaattcacacattaac |
4337346 |
T |
|
| Q |
208 |
actccttgtgttccaatagt |
227 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
4337345 |
actccttgtgttccaatagt |
4337326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 29477769 - 29477716
Alignment:
| Q |
13 |
caactctagataacttttggtgtgagtagaagtgaaggagatgtgctctattta |
66 |
Q |
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|||||| ||| |||||||||||||||||||||||| ||||||| |||| ||||| |
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| T |
29477769 |
caactcaagagaacttttggtgtgagtagaagtgagggagatgggctcaattta |
29477716 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 4404947 - 4404915
Alignment:
| Q |
191 |
ttaattcacacattaacactccttgtgttccaa |
223 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
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|
| T |
4404947 |
ttaattcacacattaacactctttgtgttccaa |
4404915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0346 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0346
Description:
Target: scaffold0346; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 12765 - 12980
Alignment:
| Q |
8 |
caactcaactctagataacttttggtgtgagtagaagtgaaggagatgtgctctatttagaggtgatcagccgtagatgagtagcaaatcaaatggctag |
107 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||| |
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| T |
12765 |
caactcaactctagataacttttgatgtgagtagaagtgaaggagatgtgctctatttagaggtgataagcagtaaatgagtagcaaatcaaatggctag |
12864 |
T |
|
| Q |
108 |
gatcgtttcattgttataaaattaatggtttactctcgtctcataaatgagtaattgttggaaaagttggcttaagaattttattaattcacacattaac |
207 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12865 |
gatcgtttaattgttaaaaaattaatggtttactctcgtctcataaatgagtaattgttggaaaagttggcttaagaattttattaattcacacattaac |
12964 |
T |
|
| Q |
208 |
actccttgtgttccaa |
223 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
12965 |
actccttgtgttccaa |
12980 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 110
Target Start/End: Complemental strand, 48435387 - 48435301
Alignment:
| Q |
24 |
aacttttggtgtgagtagaagtgaaggagatgtgctctatttagaggtgatcagccgtagatgagtagcaaatcaaatggctaggat |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||| |||| | |||| |||||||| |||||| |||||||||||| |
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| T |
48435387 |
aacttttggagtgagtagaagtgaaggagatgggctctatttataggtaaagagccaaagatgagttacaaatccaatggctaggat |
48435301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 48431814 - 48431717
Alignment:
| Q |
13 |
caactctagataacttttggtgtgagtagaagtgaaggagatgtgctctatttagaggtgatcagccgtagatgagtagcaaatcaaatggctaggat |
110 |
Q |
| |
|
|||||| ||| ||||||||| ||||||||||||| ||||||| |||||||||| |||||| |||| | |||||| |||||| |||||||||||| |
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| T |
48431814 |
caactcaagagaacttttggggtgagtagaagtgtgggagatgagctctatttataggtgaagagccaaatatgagttacaaatccaatggctaggat |
48431717 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 171226 - 171129
Alignment:
| Q |
13 |
caactctagataacttttggtgtgagtagaagtgaaggagatgtgctctatttagaggtgatcagccgtagatgagtagcaaatcaaatggctaggat |
110 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||| | |||||||||| |||||| |||| | |||||| |||||| |||||||||||| |
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| T |
171226 |
caactcaagataacttttgggatgagtagaagtgaaggagaggagctctatttataggtgaagagccaaaaatgagttacaaatccaatggctaggat |
171129 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 2470560 - 2470657
Alignment:
| Q |
13 |
caactctagataacttttggtgtgagtagaagtgaaggagatgtgctctatttagaggtgatcagccgtagatgagtagcaaatcaaatggctaggat |
110 |
Q |
| |
|
|||||| ||||||||||||| | ||||||||||| ||||| | |||||||||| |||||| |||| |||||||| |||||| |||||||||||| |
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|
| T |
2470560 |
caactcaagataacttttgggatcagtagaagtgagggagaggagctctatttataggtgaagagccaaagatgagttacaaatccaatggctaggat |
2470657 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 19950402 - 19950495
Alignment:
| Q |
13 |
caactctagataacttttggtgtgagtagaagtgaaggagatgtgctctatttagaggtgatcagccgtagatgagtagcaaatcaaatggcta |
106 |
Q |
| |
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|||||| ||| |||||||| |||||||||||||| ||||| | ||||||||| |||||| |||| |||||||| |||||| |||||||| |
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| T |
19950402 |
caactcaagagaacttttgaggtgagtagaagtgagggagaggaactctatttataggtgaagagccaaagatgagttacaaatccaatggcta |
19950495 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 14105167 - 14105264
Alignment:
| Q |
13 |
caactctagataacttttggtgtgagtagaagtgaaggagatgtgctctatttagaggtgatcagccgtagatgagtagcaaatcaaatggctaggat |
110 |
Q |
| |
|
|||||| ||| ||||||||| ||||||| |||||| ||||| | |||||||||| |||||| |||| |||||||| |||||| |||||||||||| |
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|
| T |
14105167 |
caactcaagagaacttttggggtgagtaaaagtgagggagaggagctctatttataggtgaggagccaaagatgagttacaaatccaatggctaggat |
14105264 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 55081213 - 55081116
Alignment:
| Q |
13 |
caactctagataacttttggtgtgagtagaagtgaaggagatgtgctctatttagaggtgatcagccgtagatgagtagcaaatcaaatggctaggat |
110 |
Q |
| |
|
|||||| ||| ||||||| |||||||||||||||| ||||| | |||| ||||| |||||| |||| |||| ||| |||||| |||||||||||| |
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|
| T |
55081213 |
caactcaagagaacttttagtgtgagtagaagtgagggagaggagctcaatttataggtgaagagccaaagataagttacaaatccaatggctaggat |
55081116 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 20513868 - 20513905
Alignment:
| Q |
186 |
ttttattaattcacacattaacactccttgtgttccaa |
223 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
20513868 |
tttttttaattcacaccttaacactccttgtgttccaa |
20513905 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 12906725 - 12906785
Alignment:
| Q |
13 |
caactctagataacttttggtgtgagtagaagtgaaggagatgtgctctatttagaggtga |
73 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||| ||||| | |||| ||||| |||||| |
|
|
| T |
12906725 |
caactcaagataacttttggtttgagtagaagtgagggagaggagctcaatttataggtga |
12906785 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 36725302 - 36725388
Alignment:
| Q |
24 |
aacttttggtgtgagtagaagtgaaggagatgtgctctatttagaggtgatcagccgtagatgagtagcaaatcaaatggctaggat |
110 |
Q |
| |
|
|||||||||||||||||||||||| |||| | |||| ||||| |||||| |||| |||| ||| |||||| |||||||||||| |
|
|
| T |
36725302 |
aacttttggtgtgagtagaagtgagggaggggagctcaatttataggtgaagagccaaagataagttacaaatccaatggctaggat |
36725388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 201
Target Start/End: Complemental strand, 28857561 - 28857384
Alignment:
| Q |
24 |
aacttttggtgtgagtagaagtgaaggagatgtgctctatttagaggtgatcagccgtagatgagtagcaaatcaaatggctaggatcgtttcattgtta |
123 |
Q |
| |
|
||||||||| |||||||||||||| | | | | |||||||||| |||||| |||| |||||||| | ||| |||||||| |||| ||| | |||| |
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|
| T |
28857561 |
aacttttggagtgagtagaagtgaggaacaagagctctatttataggtgaggagccaaagatgagttttagatccaatggctaagatcatttgacagtta |
28857462 |
T |
|
| Q |
124 |
taaaattaatggtttactctcgtctcataaatgagtaattgttggaaaagttggcttaagaattttattaattcacac |
201 |
Q |
| |
|
|||||||||| ||| ||| |||||||||||| ||| ||| ||||||| | | |||||||| ||||||||||| |
|
|
| T |
28857461 |
caaaattaatgatttgacctcacctcataaatgagcaataattgagaaagttgacatgagaatttttttaattcacac |
28857384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 35130209 - 35130306
Alignment:
| Q |
13 |
caactctagataacttttggtgtgagtagaagtgaaggagatgtgctctatttagaggtgatcagccgtagatgagtagcaaatcaaatggctaggat |
110 |
Q |
| |
|
|||||| ||| ||||||||| ||||||||||||| ||||| | |||||||||| |||||| || | |||||||| |||||| |||| ||||||| |
|
|
| T |
35130209 |
caactcaagagaacttttgggatgagtagaagtgagggagaggagctctatttataggtgaagagtcaaagatgagttacaaatccaatgactaggat |
35130306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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