View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9069_low_4 (Length: 453)
Name: NF9069_low_4
Description: NF9069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9069_low_4 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Original strand, 30720124 - 30720595
Alignment:
| Q |
1 |
accacattgaccttggttcttcactggtgttactgctcctttctttcaccaatccactgttgatggaacacttgcattttcatacttaaaactacttgtc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
30720124 |
accacattgaccttggttcttcactggtgttactgctcctttctttctccaatccactgttgatggaacacttgcattttcatacttaaaagtacttgtc |
30720223 |
T |
|
| Q |
101 |
tttgtgattgaggagcacatatgacctttgaatttgtttctagatgctatgaactcctcgttggtgaggtctgcaaattgattaatgccaagcttgtatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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|
| T |
30720224 |
tttgtgattgaggagcacatatgacctttgaatttgtttctagatgctatgaactcctcgttggtgaggtctgcaaattgattaatgcctaatttgtata |
30720323 |
T |
|
| Q |
201 |
gcttgtt------agcattgttggaagcttcaatgtaatttacgttttctttgaatatctttaaacgattctctctttcttgaagatccttatagacttt |
294 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30720324 |
acttgttattgccagcattgttggaagcttcaatgtaatttacgttttctttgaatatctttaaacgattctctctttcttgaagatccttatagacttt |
30720423 |
T |
|
| Q |
295 |
gccatagtgacccatccattgctcatgcttc---------------tcatcttgtagagtacgagaagtgacttgaatagcaaacaatcccaaacataaa |
379 |
Q |
| |
|
|||||||||| |||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30720424 |
gccatagtgaaccatccattgttcatgcttctcatatatgttggagtcatcttggagagtacgagaagtgacttgaatagcaaacaatcccaaacataaa |
30720523 |
T |
|
| Q |
380 |
agtaatgacaatgaaatgctatgatataattgattattggcagtcatcgtaattaattagtaaatgatgaga |
451 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
30720524 |
agcaatgacaatgaaatgctatgatataattgattattggcagtcatcgtaattaattagtaaaggatgaga |
30720595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 30892318 - 30891858
Alignment:
| Q |
1 |
accacattgaccttggttcttcactggtgttactgctcctttctttcaccaatccactgttgatggaacacttgcattttcatacttaaaactacttgtc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30892318 |
accacattgaccttggttcttcactggtgttactgctcctttctttctccaatccactgttgatggaacacttgcattttcatacttaaaagtacttgtc |
30892219 |
T |
|
| Q |
101 |
tttgtgattgaggagcacatatgacctttgaatttgtttctagatgctatgaactcctcgttggtgaggtctgcaaattgattaatgccaagcttgtatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||| |
|
|
| T |
30892218 |
tttgtgattgaggagcacatatgacctttgaatttgtttctagatgctatgaactcctcgttggtgatgtctgcaaattgattaatgcctaatttgtata |
30892119 |
T |
|
| Q |
201 |
gcttgtt------agcattgttggaagcttcaatgtaatttacgttttctttgaatatctttaaacgattctctctttcttgaagatccttatagacttt |
294 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30892118 |
acttgttattgccagcattgttggaagcttcaatgtaatttacgttttctttgaatatctttaaacgattctctctttcttgaagatccttatagacttt |
30892019 |
T |
|
| Q |
295 |
gccatagtgacccatccattgctcatgcttc---------------tcatcttgtagagtacgagaagtgacttgaatagcaaacaatcccaaacataaa |
379 |
Q |
| |
|
|||||||||| |||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30892018 |
gccatagtgaaccatccattgttcatgcttctcatatatgatggagtcatcttggagagtacgagaagtgacttgaatagcaaacaatcccaaacataaa |
30891919 |
T |
|
| Q |
380 |
agtaatgacaatgaaatgctatgatataattgattattggcagtcatcgtaattaattagt |
440 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30891918 |
agcaatgacaatgaaatgctatgatataattgattattggcagtcatggtaattaattagt |
30891858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 30881235 - 30880793
Alignment:
| Q |
1 |
accacattgaccttggttcttcactggtgttactgctcctttctttcaccaatccactgttgatggaacacttgcattttcatacttaaaactacttgtc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30881235 |
accacattgaccttggttcttcactggtgttactgctcctttctttctccaatccactgttgatggaacacttgcattttcatacttaaaagtacttgtc |
30881136 |
T |
|
| Q |
101 |
tttgtgattgaggagcacatatgacctttgaatttgtttctagatgctatgaactcctcgttggtgaggtctgcaaattgattaatgccaagcttgtatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
30881135 |
tttgtgattgaggagcacatatgacctttgaatttgtttctagatgctatgaactcctcgttggtgaggtctgcaaattgattaatgcctaatttgtata |
30881036 |
T |
|
| Q |
201 |
gcttgtt------agcattgttggaagcttcaatgtaatttacgttttctttgaatatctttaaacgattctctctttcttgaagatccttatagacttt |
294 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30881035 |
acttgttattgccagcattgttggaagcttcaatgtaatttacgttttctttgaatatctttaaacgattctctctttcttgaagatccttatagacttt |
30880936 |
T |
|
| Q |
295 |
gccatagtgacccatccattgctcatgcttc---------------tcatcttgtagagtacgagaagtgacttgaatagcaaacaatcccaaacataaa |
379 |
Q |
| |
|
|||||||||| |||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
30880935 |
gccatagtgaaccatccattgttcatgcttctcatatatgatggagtcatcttggagagtacgagaagtgacttgaatagcaaacaatcccaagcagaaa |
30880836 |
T |
|
| Q |
380 |
agtaatgacaatgaaatgctatgatataattgattattggcag |
422 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30880835 |
aacaatgccaatgaaatgctatgatataattgattattggcag |
30880793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 16867933 - 16868369
Alignment:
| Q |
1 |
accacattgaccttggttcttcactggtgttactgctcctttctttcaccaatccactgttgatggaa---cacttgcattttcatacttaaaactactt |
97 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |||||||||||||| | ||||||||| | ||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
16867933 |
accacattgtccttggttcttcacaggtgtaactgctcctttcttcctccaatccaccgaggatggaattgcacttgcattttcatacttaaaagtactt |
16868032 |
T |
|
| Q |
98 |
gtctttgtgattgaggagcacatatgacctttgaatttgtttctagatgctatgaactcctcgttggtgaggtctgcaaattgattaatgccaagcttgt |
197 |
Q |
| |
|
||| |||||||||| ||||||||||| || ||||| ||||||||||| | | ||||||| |||||||||||||| ||||||||||||| ||| || ||| |
|
|
| T |
16868033 |
gtccttgtgattgaagagcacatatgccccttgaacttgtttctagacgatgtgaactcgtcgttggtgaggtcggcaaattgattaacgcctagtgtgt |
16868132 |
T |
|
| Q |
198 |
atggcttgtt------agcattgttggaagcttcaatgtaatttacgttttctttgaatatctttaaacgattctctctttcttgaagatccttatagac |
291 |
Q |
| |
|
|| ||||||| | | |||||| |||||||||||||||| || ||||| |||||||||| ||||| ||||| ||||||||| ||||||||| || |
|
|
| T |
16868133 |
atagcttgttattgtcacctttgttgaaagcttcaatgtaattcacattttcagtgaatatcttgaaacgtttctccctttcttgagaatccttataaac |
16868232 |
T |
|
| Q |
292 |
tttgccatagtgacccatccattg---------ctcatgcttctcatcttgtagagtacgagaagtgacttgaatagcaaacaatcccaaacataaaagt |
382 |
Q |
| |
|
||| ||||| |||| ||||||||| ||||| | | |||||||| ||||| ||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
16868233 |
tttaccatattgactcatccattgccggtgcctctcatacatgtcatcttggagagtgcgagaagtgacttgaatagcaaacaatcctaaacatagaagc |
16868332 |
T |
|
| Q |
383 |
aatgacaatgaaatgctatgatataattgattattggcag |
422 |
Q |
| |
|
|||| |||||||| |||||||||| ||||||||||||| |
|
|
| T |
16868333 |
aatgccaatgaaa---tatgatataagtgattattggcag |
16868369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 44731559 - 44731896
Alignment:
| Q |
1 |
accacattgaccttggttcttcactggtgttactgctcctttctttcaccaatccactgttgatggaa---cacttgcattttcatacttaaaactactt |
97 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||| | |||||||||||| || || | ||||| ||||||||||||||||| || || |
|
|
| T |
44731559 |
accacattgaccttggttcttcacaggtgtcactgctcctttcttcctccaatccactgtggacgggattgcacttacattttcatacttaaaagtagtt |
44731658 |
T |
|
| Q |
98 |
gtctttgtgattgaggagcacatatgacctttgaatttgtttctagatgctatgaactcctcgttggtgaggtctgcaaattgattaatgccaagcttgt |
197 |
Q |
| |
|
|| || | ||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
44731659 |
gttttcgcgattgaggagcacatatgacccttgaatttgtttctagatgctatgaactcttcattggtgaggtctgcaaattgattaatgcctaacttgt |
44731758 |
T |
|
| Q |
198 |
atggcttgtt------agcattgttggaagcttcaatgtaatttacgttttctttgaatatctttaaacgattctctctttcttgaagatccttatagac |
291 |
Q |
| |
|
|| ||||||| | |||||||| || ||||||||||||| || ||| || |||||||||| ||| | ||| |||||||| ||||||||||||| |
|
|
| T |
44731759 |
atagcttgttattggcatcattgttgaaaacttcaatgtaattcacatttgctgtgaatatcttgtgacgttcctccctttcttgtggatccttatagac |
44731858 |
T |
|
| Q |
292 |
tttgccatagtgacccatccattgctcatgcttctcat |
329 |
Q |
| |
|
||||| ||| |||| |||||||||||| ||| |||||| |
|
|
| T |
44731859 |
tttgctatattgactcatccattgctcgtgcctctcat |
44731896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 8898856 - 8898417
Alignment:
| Q |
1 |
accacattgaccttggttcttcactggtgttactgctcctttctttcaccaatccactgttgatggaa---cacttgcattttcatacttaaaactactt |
97 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |||||||||||||| | |||||||||||| ||||| | ||||| ||||||||||||||||| || || |
|
|
| T |
8898856 |
accacattggccttggttcttcacaggtgtcactgctcctttcttcctccaatccactgtagatgggattgcacttacattttcatacttaaaagtagtt |
8898757 |
T |
|
| Q |
98 |
gtctttgtgattgaggagcacatatgacctttgaatttgtttctagatgctatgaactcctcgttggtgaggtctgcaaattgattaatgccaagcttgt |
197 |
Q |
| |
|
||| || ||||||| ||||||||||| || ||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||| || |||| |
|
|
| T |
8898756 |
gtccttatgattgatgagcacatatgtcccttgaatttgttcctagatgctacaaactcctcattggtgaggtctgcaaattgattaatgcctagtttgt |
8898657 |
T |
|
| Q |
198 |
atg------gcttgttagcattgttggaagcttcaatgtaatttacgttttctttgaatatctttaaacgattctctctttcttgaagatccttatagac |
291 |
Q |
| |
|
||| |||| | |||| ||| ||||||||||||| || | ||||||| |||||||||| ||||| ||||| ||||||||| ||||||||||||| |
|
|
| T |
8898656 |
atgattcgttattgtcaccattattgaaagcttcaatgtatttcatgttttctgtgaatatcttgaaacgcttctccctttcttgatgatccttatagac |
8898557 |
T |
|
| Q |
292 |
tttgccatagtgacccatccattgctcatgcttct------------catcttgtagagtacgagaagtgacttgaatagcaaacaatcccaaacataaa |
379 |
Q |
| |
|
||||||||||||| |||||| |||||||| ||| ||||||| ||||||||||| |||||||||||||| |||||||||| || ||| |
|
|
| T |
8898556 |
tttgccatagtgattcatccaccgctcatgcctctcatgcatggagccatcttggagagtacgagaggtgacttgaatagcccacaatcccaagcagaaa |
8898457 |
T |
|
| Q |
380 |
agtaatgacaatgaaatgctatgatataattgattattggcag |
422 |
Q |
| |
|
| |||| |||||||| ||||||||||||||||||| |||| |
|
|
| T |
8898456 |
accaatgccaatgaaa---tatgatataattgattattagcag |
8898417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 31726564 - 31726522
Alignment:
| Q |
210 |
cattgttggaagcttcaatgtaatttacgttttctttgaatat |
252 |
Q |
| |
|
|||||||| |||||||||||||||| || |||||||||||||| |
|
|
| T |
31726564 |
cattgttgaaagcttcaatgtaattcacattttctttgaatat |
31726522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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