View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9069_low_9 (Length: 344)
Name: NF9069_low_9
Description: NF9069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9069_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 43203950 - 43203724
Alignment:
| Q |
16 |
acatcaggaaacatgggagagaatatatttgtgtcaacggacataatgtttttatgactatatctgctgacataatgttgcaaaaatgctaaagtattac |
115 |
Q |
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| T |
43203950 |
acatcaggaaacatggcagagaatatatttgtgtcaacggacataatgtttttatgactatatctgctgacataatgttgcaaaaatgctaaagtattac |
43203851 |
T |
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| Q |
116 |
aatacctcatttgatgtctattcgactaggttcataggccgtccactattattacaaatataaatggacacggtaatgataacgagctaaatactattct |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43203850 |
aatacctcatttgatgtctattcgactaggttcataggccgtccactattatttcaaatataaatggacacggtaatgataacgagctaaatactattct |
43203751 |
T |
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| Q |
216 |
attttaaaagtgtcaagatttgttctc |
242 |
Q |
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||||||||||||||||||||||||||| |
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| T |
43203750 |
attttaaaagtgtcaagatttgttctc |
43203724 |
T |
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