View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9070_low_1 (Length: 1166)
Name: NF9070_low_1
Description: NF9070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9070_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 517; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 567 - 1150
Target Start/End: Complemental strand, 20715941 - 20715355
Alignment:
| Q |
567 |
atatgaatgacatggagggaaattcgaatcaaatttcttcaatacaatacataattattttagcagattatcagatggaaatcttcaatgacagtatgac |
666 |
Q |
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| T |
20715941 |
atatgaatgacatggagggaaattccaatcaaatttcttcaatacaatacataattattttagcagattatcagatggaaatcttcaatgacagtatgac |
20715842 |
T |
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| Q |
667 |
accaaactcatataaacaaatgaagaatacaatggagaaagatcgaataaaaataagatgtatacacattttagacatgtattatgtactcaccggtaac |
766 |
Q |
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| T |
20715841 |
accaaactcatataaacaaatgaagaatacaatggagaaagatcgaataaaaataagatgtatacacattttagacatgtattatgtactcaccggtaac |
20715742 |
T |
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| Q |
767 |
acttctc---tcaaaaaccaagaacnnnnnnntccgttaaaagaaaatcgtaatggtcagactcatacataaaacacttcatatatgcatgtgaagattt |
863 |
Q |
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| T |
20715741 |
acttctcctctcaaaaaccaagaacaaaaaaatccgttaaaagaaaaacgtaatggtcagactcatacataaaacactccatatatgcatgtgaagattt |
20715642 |
T |
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| Q |
864 |
tcaaaaggtgaggaaccatgcatgaaatgagcttgttaaagtagtttttcgcaacacgcttgagttgatttt-agaaattcatgtattggtgctcattct |
962 |
Q |
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| T |
20715641 |
tcaaaaggtgaggaatcatgcatgaaatgagcttgttaa-gtagtttttcgcaacacccttgagttgatttttagaaattcatgtattggtgctcattct |
20715543 |
T |
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| Q |
963 |
gatttgaacacacatccgaaaatcctgttcttagccttggtgtgctcatagaccttacttttgctttgctagattcagtcacagccatgtacttagggaa |
1062 |
Q |
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| T |
20715542 |
gatttgaacacacatccgaaaatcctgttcttagccttggtgtgctcatagaccttacttttgctttgctagattcagtcacagccatgtacttagggaa |
20715443 |
T |
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| Q |
1063 |
aaccggagaattcggcagagaactctcatctccgattgaacttctttttacatgagaaaatgattttctttggactgaaacttgtgat |
1150 |
Q |
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| T |
20715442 |
aaccggagaattcggcagagaactctcatctccgattgaacttctttttacatgagaaaatgattttctttggactgaaacttgtgat |
20715355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 3e-76
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 20716100 - 20715943
Alignment:
| Q |
18 |
gtttcatatgtggaaaaccatgaagatgacgattatgatattccttccaaagagccgcaacaaaacgaatcatttaacaatgatgaagttgagaaaaaga |
117 |
Q |
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| T |
20716100 |
gtttcatatgtggaaaaccatgaagatgacgattatgatattccttccaaagagccgcaacaaaacgaatcatttaacaatgatgaagttgagtaaaaga |
20716001 |
T |
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| Q |
118 |
acgtgcctgaagaaataattttaaggaatacaagcaaagacgagcattcacatattca |
175 |
Q |
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| T |
20716000 |
acgtgcctgaagaaataattttatggaatacaagcaaagacaagcattcacatattca |
20715943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 18 - 178
Target Start/End: Complemental strand, 26305377 - 26305217
Alignment:
| Q |
18 |
gtttcatatgtggaaaaccatgaagatgacgattatgatattccttccaaagagccgcaacaaaacgaatcatttaacaatgatgaagttgagaaaaaga |
117 |
Q |
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| T |
26305377 |
gtttcgtatgtggaaaccaatgaagatgacaattatgatattcatcccaaaaagccacgacgagatgaatcattgaacattgatgaagttgagaaaaaga |
26305278 |
T |
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| Q |
118 |
acgtgcctgaagaaataattttaaggaatacaagcaaagacgagcattcacatattcaagg |
178 |
Q |
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| T |
26305277 |
acgtgtctgaagaaacatttttaaggaatacaagcaaagatgggcactctcatgttcaagg |
26305217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 30 - 181
Target Start/End: Complemental strand, 20628355 - 20628204
Alignment:
| Q |
30 |
gaaaaccatgaagatgacgattatgatattccttccaaagagccgcaacaaaacgaatcatttaacaatgatgaagttgagaaaaagaacgtgcctgaag |
129 |
Q |
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|||||| | ||||| || |||||||||||| |||| ||| |||| | |||||| |||||||||||||||||||||||||||||| ||| || |||||| |
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| T |
20628355 |
gaaaactacgaagacgaggattatgatatttcttcgaaaaagccacggcaaaacagatcatttaacaatgatgaagttgagaaaaacaacatgtctgaag |
20628256 |
T |
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| Q |
130 |
aaataattttaaggaatacaagcaaagacgagcattcacatattcaaggaga |
181 |
Q |
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| T |
20628255 |
aaacatttttaagaaatactatcgaagatgaacattcttatgttcaaggaga |
20628204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 36532034 - 36532146
Alignment:
| Q |
18 |
gtttcatatgtggaaaaccatgaagatgacgattatgatattccttccaaagagccgcaacaaaacgaatcatttaacaatgatgaagttgagaaaaaga |
117 |
Q |
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||||||||| ||||||||||||||||||| || ||| | ||||||||||| |||| | |||| | ||||||| ||||||| ||||||||||| |||| |
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| T |
36532034 |
gtttcatataaggaaaaccatgaagatgaccatgatgctgttccttccaaaaagccacgacaagatgaatcatcgaacaatgctgaagttgagagtaaga |
36532133 |
T |
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| Q |
118 |
acgtgcctgaaga |
130 |
Q |
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| T |
36532134 |
acgtatctgaaga |
36532146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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